Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2237 ATGGCTGTTGAAGCTCGCCATCTCAATCTTTTCTCTCCTCAACTCAGAGGAAACCGAGAAATCATGAGCCCCATTGAAGCGAACATCAATCTCTACAACACCCAGACTGGGTACTCATCGGTGCTCCCATTATCGGGTACAACCACAGCGACGGAGGCTCTGCTTCAAGCGCCTTACAATTCTTTGATCGTCGATTCCGTTACTCAGAAAACAGCTATCAAATCTGATAGTGGCCTTACCTACAACGTACCCGTACCAAGAAAGCGTTCCAGGGATTCGATCAACTACCCCCTTTTCTCCTATCCAGCCACCACCCCTCCTCCGTCTCTCAAGAATTGTTCCGCTTTTTCATTCCTCGGTGATGACATTTCGCTCCAGATCCAGCAGCAACAACTTGATGTCGATCGTCTCATTGCCCAGCACATGGAGAATGTGAGAATGGAAATAGAGGAAAAGCGCAAGAGGCAGGCGAGGAGGATCGTAGAGGCAATCGAAGTGGGGATGATGAAGAGGCTTAAAGCCAGAGAAGAAGAAATAGCAAAGATTGGTAAATTGAACTGGGCTCTGGAAGAGAAGGTGAAAACGCTGTATGTAGAGAACCAATTATGGAGGGATTTGGCACAATCCAACGAAGCCACAGCCAATGCTCTCCGCACAAACCTCCAGCAAGTATTAGCACAGGTCAAGGACGACCGTAGATTCGACGACGACGCTGCCACGGTCTCCCCGGCAGCAGAACTAATGGACGATGCCCAGTCTTGCTGCGGAAGCAGCGGCGGCGATGATAACAACCCCGATGAAAACAGGGACATGGAAGGGTGGCGCATGATAGTAGGGGGTCCTCAGGATAAGGATGAAGAAGAAGAAGATAGGAGTAAAACAAGTGGGAGCAGATTGTGTAGGAACTGTGGGAAAGAGGAATCGTGCGTGCTGATCTTGCCGTGCAGGCACCTGTGTCTCTGTACTGTGTGTGGGTCTACCCTCCACACTTGTCCCGTCTGTAAATCCTTCAAAACCGCTAGTGTCCATGTTAACATGTCCTAA 1044 0.4981 MAVEARHLNLFSPQLRGNREIMSPIEANINLYNTQTGYSSVLPLSGTTTATEALLQAPYNSLIVDSVTQKTAIKSDSGLTYNVPVPRKRSRDSINYPLFSYPATTPPPSLKNCSAFSFLGDDISLQIQQQQLDVDRLIAQHMENVRMEIEEKRKRQARRIVEAIEVGMMKRLKAREEEIAKIGKLNWALEEKVKTLYVENQLWRDLAQSNEATANALRTNLQQVLAQVKDDRRFDDDAATVSPAAELMDDAQSCCGSSGGDDNNPDENRDMEGWRMIVGGPQDKDEEEEDRSKTSGSRLCRNCGKEESCVLILPCRHLCLCTVCGSTLHTCPVCKSFKTASVHVNMS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2237 347 CDD mRING-HC-C3HC5_CGRF1-like 298 335 - -
Glsi04g2237 347 ProSiteProfiles Zinc finger RING-type profile. 300 335 IPR001841 -
Glsi04g2237 347 Coils Coil 139 159 - -
Glsi04g2237 347 MobiDBLite consensus disorder prediction 277 300 - -
Glsi04g2237 347 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 74 344 IPR017066 -
Glsi04g2237 347 FunFam BOI-related E3 ubiquitin-protein ligase 1 280 347 - -
Glsi04g2237 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 347 IPR013083 -
Glsi04g2237 347 Pfam Zinc finger, C3HC4 type (RING finger) 298 336 - -
Glsi04g2237 347 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2237 Glsi-ChrGlsi04 75061670 75062947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2237 286 336 Miscellaneous Gene Families AT4G39050 35.185 2.29e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g2237 04 75061670 75062947 Glsi04g2237 04 75061670 75062947 ECH