Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2233 ATGAAGATGTGTTATCGATTCCTTGCTTTCCCTGTCCTGCTTGCATGGCTTGTTTGGGTATTGAGTACCAGCGATAGCGATGTTGATCTGCGTTATAGGGGTTGTGTGAAACAATGTGAGGAAACTGCATGTGTTGAGCAAAGAGGCTTTTCAAACGGTATATTTTCTTCACAGTGGAAAAATTGGGTATGCCAAAGTGATTGCCGTAGCCACTGCAAAGCAAAAGAATTACTTAATGATCATCCAGTCAGATACCGTGGTAAATGGCCTCTCAGACGTACCAATAATGGGAAGCAGGAGCATTTTGCGGTGACTATCTCTACTTTCGTTCTTGCTACGCATGGACATCGTTGGGTTTCCTTTTACTTCTCTCTGTACCGAAGGATGCCTCTAAGAGACGGTAATAGGGCATACTATCCGTATGCCAGTTTGTGGCATACCTATGGGCTCTTGTCACTAATCTTCTGGTTCTGGAACACTGTTTTCTATATTCGACATTTTGACCTGACGGAGAAACTAGACCAGTCATCTGCCCTAGCTCTCCTTACATACTCCCTCATTGTGGCCATACTACGAAGTTGCAATGTCAAAAGTGTTGCAGTGAGAGTGATGGTTGCTGCTCCGCTGATTGGTTTTGTGGCCACCCACATAATATACCTTAACACAATACAATTAGACTATATTTTGATCGTGGCATTCTCTATCTCATTGTGCAGTTTGGAACATGAAAGTTTGCACTGTGATGGCCGTGGCGAAACTTACGATTTGGGCAGTTTGGGCAGGGTTTACAAAGAATACTTCACGGCGGAAGATCTGGTTAAGAAATCGACATGCGACAAAATGACTAGAAATGATAAGTTGATCATTGGTTTTAGAAGGCGGCATCGAAGGGACTGGAAGCGGCTGCTCTTGGCCAACTTTTCCTGTCTCTCTGTAAGGCTCACATTAGTTCAGCTTCTCATTTTTTGTTTTTGTGAAGAATTAATACAAGTCAAGATGGTGAAGTTCACAGCTGAAGAGCTTCGTCGCATTATGGACCTTAAGCACAATATTCGTAATATGTCTGTTATTGCACATGTTGATCATGGAAAATCAACCCTCACTGATTCTCTAGTGGCAGCTGCTGGTATTATTGCACAAGAATCGGCAGGTGATGTTCGGATGACTGATACCCGAGCAGATGAAGCAGAGCGTGGTATCACAATCAAGTCTACTGGTATCTCTCTCTACTATGAAATGGACTATAATTCTCTCAAGAACTACAAAGGGGAACGCCATGGAAATGAGTACCTCATAAATCTGATTGACTCCCCTGGGCATGTTGACTTCTCATCTGAGGTCACAGCTGCACTTCGCATTACTGATGGAGCACTAGTGGTGGTGGATTGTGTTGAGGGTGTCTGTGTCCAGACAGAAACTGTGCTGCGTCAGGCACTGGGAGAAAGGATTAGGCCTGTTTTGACTGTCAATAAAATGGACAGGTGCTTCCTTGAGCTCCAGGTGGATGGAGAGGAGGCTTACCAGACCTTTCAAAGGGTAATTGAGAATGCTAATGTGATCATGGCTACATATGAAGATCCCCTCCTTGGTGATGTCCAGGTTTACCCAGAGAATGGAACAGTTGCTTTTTCTGCTGGTTTGCATGGTTGGGCTTTCACTTTGACCAACTTTGCCAAAATGTATGCCTCCAAATTTGGAGTTGATGAATCAAAGATGATGGAAAGGCTCTGGGGTGAGAACTTCTTTGATCCAGCCACCAAGAAATGGACCAGCAAGAATACTGGTTCTCCTACTTGCAAGCGTGGGTTTGTTCAGTTCTGTTATGAGCCTATCAAGCAGATTATTTCGACTTGTATGAATGATCAGAAGGATAAGCTGTGGCCTATGTTGCAAAAGCTTGGAGTCACCATGAAATCGGATGAGAAGGACTTGATGGGCAAAGCATTGATGAAACGTGTCATGCAAACCTGGCTCCCAGCAAGTGATGCACTTTTGGAAATGATGATATTCCATCTTCCCTCCCCGTCAAAGGCCCAAAGGTATCGTGTAGAGAACTTGTATGAGGGTCCTCTTGATGATCCTTATGCTACTGCAATCAGGAATTGTGATCCTGAGGGACCCCTAATGCTTTATGTCTCAAAAATGATTCCTGCATCTGATAAGGGTAGGTTTTTTGCCTTTGGCCGTGTCTTCTCTGGTAAGGTCTCCACCGGCATGAAGGTCAGAATTATGGGACCAAATTATGTCCCTGGAGAGAAGAAAGACCTCTATGTTAAGAGTGTGCAAAGAACTGTGATTTGGATGGGAAAGAAGCAGGAAACTGTTGAGGATGTGCCTTGTGGTAACACAGTTGCTATGGTTGGTTTGGATCAATTTATTACCAAGAATGCTACATTAACAAATGAGAAGGAAGTGGATGCCCATCCTATCCGAGCTATGAAGTTTTCTGTCTCACCTGTGGTTCGTGTTGCCGTTCAGTGCAAGGTTGCTTCTGATCTTCCCAAGCTTGTTGAAGGTCTTAAACGGTTGGCCAAATCAGATCCTATGGTGTTATGTACTATTGAGGAGTCTGGAGAGCACATTGTTGCTGGTGCAGGAGAACTTCACCTTGAGATCTGTTTGAAGGACTTGCAGGAAGATTTTATGGGTGGAGCTGAGATTATAAAATCTGACCCTGTTGTGTCCTTCCGTGAGACTGTTCTAGAGAGATCTTGCCGAACTGTGATGAGTAAGTCACCCAACAAGCACAACCGTCTGTACATGGAAGCAAGACCCCTGGAGGAAGGGCTTGCGGAGGCAATTGATGATGGCAAGATTGGACCCAGGGATGACCCCAAAGCTCGTTCTAGAATCTTGTCTGAAGAGTTTGGTTGGGACAAGGATCTTGCCAAGAAAATCTGGTGTTTTGGACCTGAGACCCTTGGACCAAACATGGTCGTGGATATGTGTAAGGGAGTCCAATACCTGAATGAAATCAAGGACTCCGTTGTTGCTGGATTCCAGTGGGCCTCGAAAGAAGGTGCTCTGTCTGAAGAGAACATGAGGGGTATCTGCTTTGAAGTCTGTGATGTTGTTCTTCATGCTGATGCTATCCACAGAGGAGGTGGTCAGATCATTCCTACTGCTAGGAGAGTTTTCTATGCTTCTCAGTTGACAGCCAAGCCCAGACTTCTTGAGCCTGTTTACCTTGTGGAAATCCAAGCCCCTGAGCAGGCTCTTGGTGGCATCTACAGTGTTCTTAACCAGAAACGGGGACATGTCTTTGAGGAAATGCAGAGGCCTGGTACGCCACTTTACAACATCAAGGCATACCTTCCTGTCATTGAGTCCTTTGGGTTCTCAAGCACATTAAGGGCTGCAACATCAGGCCAGGCTTTCCCTCAGAGTGTCTTTGATCACTGGGATATGATGCCATCAGATCCCCTGGAGCCTGGTTCACAAGCTGCACAGCATGTTGCAGACATCCGCAAGAGGAAGGGCTTGAAGGAGCAGATGACCCCACTTTCAGAATTCGAGGATAAGCTTTAA 3528 0.4532 MKMCYRFLAFPVLLAWLVWVLSTSDSDVDLRYRGCVKQCEETACVEQRGFSNGIFSSQWKNWVCQSDCRSHCKAKELLNDHPVRYRGKWPLRRTNNGKQEHFAVTISTFVLATHGHRWVSFYFSLYRRMPLRDGNRAYYPYASLWHTYGLLSLIFWFWNTVFYIRHFDLTEKLDQSSALALLTYSLIVAILRSCNVKSVAVRVMVAAPLIGFVATHIIYLNTIQLDYILIVAFSISLCSLEHESLHCDGRGETYDLGSLGRVYKEYFTAEDLVKKSTCDKMTRNDKLIIGFRRRHRRDWKRLLLANFSCLSVRLTLVQLLIFCFCEELIQVKMVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQESAGDVRMTDTRADEAERGITIKSTGISLYYEMDYNSLKNYKGERHGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPENGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIISTCMNDQKDKLWPMLQKLGVTMKSDEKDLMGKALMKRVMQTWLPASDALLEMMIFHLPSPSKAQRYRVENLYEGPLDDPYATAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTIEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGKIGPRDDPKARSRILSEEFGWDKDLAKKIWCFGPETLGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALSEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQSVFDHWDMMPSDPLEPGSQAAQHVADIRKRKGLKEQMTPLSEFEDKL 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2233 1175 FunFam Translation elongation factor 2 675 816 - -
Glsi04g2233 1175 Gene3D - 902 1054 IPR014721 -
Glsi04g2233 1175 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 349 676 IPR000795 GO:0003924|GO:0005525
Glsi04g2233 1175 FunFam Translation elongation factor 2 335 569 - -
Glsi04g2233 1175 Gene3D - 335 569 IPR027417 -
Glsi04g2233 1175 PRINTS GTP-binding elongation factor signature 433 443 IPR000795 GO:0003924|GO:0005525
Glsi04g2233 1175 PRINTS GTP-binding elongation factor signature 353 366 IPR000795 GO:0003924|GO:0005525
Glsi04g2233 1175 PRINTS GTP-binding elongation factor signature 449 460 IPR000795 GO:0003924|GO:0005525
Glsi04g2233 1175 PRINTS GTP-binding elongation factor signature 485 494 IPR000795 GO:0003924|GO:0005525
Glsi04g2233 1175 PRINTS GTP-binding elongation factor signature 397 405 IPR000795 GO:0003924|GO:0005525
Glsi04g2233 1175 SUPERFAMILY EF-G C-terminal domain-like 816 892 IPR035647 -
Glsi04g2233 1175 CDD EF2_snRNP_III 819 891 - -
Glsi04g2233 1175 SMART EFG_C_a 1056 1145 IPR000640 -
Glsi04g2233 1175 CDD aeEF2_snRNP_like_IV 891 1063 - -
Glsi04g2233 1175 CDD EF2_II 707 802 - -
Glsi04g2233 1175 SMART EFG_IV_2 937 1054 IPR005517 GO:0005525
Glsi04g2233 1175 Pfam Elongation factor G C-terminus 1056 1142 IPR000640 -
Glsi04g2233 1175 Gene3D Elongation Factor G (Translational Gtpase), domain 3 817 895 - -
Glsi04g2233 1175 Gene3D - 1055 1175 - -
Glsi04g2233 1175 FunFam Translation elongation factor 2 901 1054 - -
Glsi04g2233 1175 SUPERFAMILY Ribosomal protein S5 domain 2-like 894 1058 IPR020568 -
Glsi04g2233 1175 FunFam Translation elongation factor 2 1055 1175 - -
Glsi04g2233 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 673 IPR027417 -
Glsi04g2233 1175 Pfam Elongation factor Tu GTP binding domain 349 674 IPR000795 GO:0003924|GO:0005525
Glsi04g2233 1175 CDD eEF2_snRNP_like_C 1059 1138 - -
Glsi04g2233 1175 Pfam Elongation factor G, domain IV 942 1054 IPR005517 GO:0005525
Glsi04g2233 1175 CDD EF2 352 562 - -
Glsi04g2233 1175 FunFam Translation elongation factor 2 818 895 - -
Glsi04g2233 1175 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 390 405 IPR031157 -
Glsi04g2233 1175 Pfam Elongation Factor G, domain III 819 881 IPR041095 -
Glsi04g2233 1175 Gene3D Translation factors 675 816 - -
Glsi04g2233 1175 Pfam Per1-like family 57 236 IPR007217 GO:0006506
Glsi04g2233 1175 NCBIfam small GTP-binding protein domain 352 508 IPR005225 GO:0005525
Glsi04g2233 1175 SUPERFAMILY EF-G C-terminal domain-like 1059 1170 IPR035647 -
Glsi04g2233 1175 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 340 1174 - -
Glsi04g2233 1175 SUPERFAMILY Translation proteins 675 808 IPR009000 -
Glsi04g2233 1175 Pfam Elongation factor Tu domain 2 726 799 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2233 Glsi-ChrGlsi04 75028980 75036740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2233 333 1175 Eukaryotic Initiation Factors Gene Family AT1G56070 92.289 0.0 1634