Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2232 ATGGGTAAGGAAGATTTGAGCATGGATGAGTATTTGGAAGATGAAGTTCAACTTCCAGGGTTTCGCTTCCATCCCACAGATCAAGAACTTGTGGGTTTCTACCTCCGCAGGAAGCTTGACAGGAAACCCACAAGTATCGAACTCATCAAACATATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAAGCCAGTAGTACAGGAGGAGAGAAGGAATGGTACTTCTTTTGTAAAAGGGAGAGGAAGTATAGGAATAGTGTAAGGCCTAATAGAGTCACTGGCTCAGGGTTTTGGAAAGCGACTGGAATAGACAAGCCAGTGTACTCACTTGGAGGAGAAGGCAATGACTGTATTGGGCTAAAGAAAACACTGGTGTATTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCAACCTCCAATAATGACGCCACCAACACCAAAAATAACACAAACATTGCCCAAGAAGCTGAAATTTGGACATTGTGTCGAATTTTCAAACGAAATGTGACACAAAGAAAGTGCACACAAGACTGGAGACAATTGGCTTCCAAGCGTTCTTCCATTGCCAAGGGCACCAGAATGAGCAGCAGTGTGGAGTCTTGTAATAGTACTACTACTACTAATAATAATCAAGAAGCATACATAAATTTCGGTGGAAACCTTCATGAGCATTATTACCAGGATGAGGAGAAACCTGTCGTGAGCTACACAAGTAATTATAATGATCCAATGAATCAGGTTCATGCAAGCCATTTGATGAGTCCTTCAGTGGCACAACCACAACTAACTGCGCAATCATCGGCTTTGAACTTCTCCATTAACCAGGCAAATTCCAATGACATGTTTTCATTTGAGAACTGGGATGAGCTTGGATCAGTTGTGCAGTTTGCTCTGGATATGTAA 936 0.4252 MGKEDLSMDEYLEDEVQLPGFRFHPTDQELVGFYLRRKLDRKPTSIELIKHIDIYKYDPWDLPKASSTGGEKEWYFFCKRERKYRNSVRPNRVTGSGFWKATGIDKPVYSLGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPTSNNDATNTKNNTNIAQEAEIWTLCRIFKRNVTQRKCTQDWRQLASKRSSIAKGTRMSSSVESCNSTTTTNNNQEAYINFGGNLHEHYYQDEEKPVVSYTSNYNDPMNQVHASHLMSPSVAQPQLTAQSSALNFSINQANSNDMFSFENWDELGSVVQFALDM 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2232 311 FunFam NAC domain-containing protein 35 26 181 - -
Glsi04g2232 311 SUPERFAMILY NAC domain 9 178 IPR036093 GO:0003677|GO:0006355
Glsi04g2232 311 Gene3D NAC domain 26 182 IPR036093 GO:0003677|GO:0006355
Glsi04g2232 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 266 - -
Glsi04g2232 311 ProSiteProfiles NAC domain profile. 17 178 IPR003441 GO:0003677|GO:0006355
Glsi04g2232 311 Pfam No apical meristem (NAM) protein 19 147 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2232 Glsi-ChrGlsi04 75018053 75020516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2232 14 189 NAC Transcription Factor Family AT5G39820 57.812 1.57e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi04g2232 NAM 1.1e-36 No_clan