Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2223 ATGAGCTTCGTGTCTACACTAGGAGAAGAAAACCCAAGAAAAAAAAGTGAGCACCCAGCTCATCTCACACAAAACCAGGAATCTGAACTGGGTCTAGATTCCCCTCAAGAACACCTTGGCAAGGAAGCCATCAATGTAGCACCTTTAATTGATGATTCTAACATTCCCATTGCATCTGGGAAAGGGGTTAGAAGTTGCACTCAGAAAAGAACAGTGGGATGCAAATGCATATTTACTATCAAATACAATGTGTATGGAAGTATAGATAGACTAAAAGTTAGGCTGGTAGCCAAAGGATTTACACAATCTTATGGGATAAATTACCAAGAGACTTTTGCACTAGTAGCTAAGCTGAATACTACTCCGGTCCTATTCTCCCTTATAGCTAACCTTGATTGGCTCCTTTATCAGTTAGATGTTAAGAATGTCTTCTTGAATAGCAACTTGAAGGAAGAACTATACATAGAAATTCCACCAGGTCTAACAAACTCTAATCACAATACGGACTTCAGTATTCCAGATTATAACTTTGCAGTCAACTGTGGCGGTCGTCAAATTATATCATCAAATGGAATTGTGTATGAAGGGGATGATGAAACACTTGGTCCCGCTACATATTTTGTTACTGATACAAAGAGATGGGCAGTTAGCAATGTTGGATTATTTGTTGGAAGTACCAATCTTTACAAAACTCATGTGTCTAATTTATCCACTGGTACCGTGGATCCAGAGCTCTTCCGAACAGCACGGCTCTCTGCTTCATCATTAAGATACTATGGCCTGGGGCTTGAAAATGGTCATTACAACGTTACCCTCCATTTCTCAGAAACGTCTATTCTAAATTCTAGAAGCACATGGAAAAGTGTTGGGAGACGGGTCTTTGATATATATATCCAGGGGAATCTTGTTTTGAAGGATTTTGACATAAGAAAGGAAGCTGGGGGGGCCTCTTTTAGAGCTGTCCAAAGGGAATTCCGGGTTCTTGTTTCTGTAAACCATCTTGAGATCCATCTCTTTTGGGCTGGGAAAGGGACTTGCTGCATACCACCAGAGCAAGCTACTTATGGTCCTCTGATTTCAGCAATCAGCACTACCCCAGATTTCACACCCACTGTCAGTAACAAACCTCCAACAAGTGAAAAGAACAGAACCGGTCTGATTGTGGGAATTGTTGTTGGTGTTGGAGTTGTAAGCTTTCTGTCTGGTCTTGCGGGTTTCTGTATCATTCAGAGAAGAAAGCATCAGGAAGATGGTAACAAAGAGCTTTTAGGTATTGATACAAAGCCACACACTTTCAGCTATTCTAAGTTAAGGAATGCTACTGATAACTTCAATCTTGATAACAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTACAAGGGGACACTTAATGATGGAAGAGTAATTGCTGTGAAACAACTATCTGTAGGATCTCATCAAGGAAAGAGCCAGTTCATAAATGAGATTGCTACTATATCTTCTGTGCAACATCGAAATCTTGTTAAATTATATGGATGTTGCATTGAAGGAGATAAAAGACTTCTTGTCTATGAGTATCTTGAAAACAAGAGTCTTGATCAAGCATTATTTGGAAATTGTTTAACGCTCACATGGCTCACTCGCTATGATATCTGCTTCGGTGTTGCTAGAGGTTTAGCTTATCTTCATGAAGAGTCACGGCTCCGTATTGTACACCGTGATGTAAAAGCTAGTAACATTCTACTTGATTATGAGCTTATCCCTAAAATATCTGATTTTGGTTTAGCCAAGTTATATGATGACAAAAAGACCCATATAAGCACTCGGGTGGCTGGGACTATTGGATATCTTGCTCCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCGGATGTGTTTTCCTTTGGGGTTGTGGCTCTAGAGATAGTTTGCGGGAGGCCAACTTCTGATTCAAGCTTGAAAGGAGAGAAAATGTATCTTCTAGAATGGGCTTGGCATCTGCATGAAAACAATTGTATAATTGAACTGGTAGATCCTAGACTGTCAGATTTCAATGAGGAAGAAGTCAAAAGAATTGTAGGGATATCTCTTCTGTGCACTCAAGCATCACCATTTTTACGGCCATCAATGTCCCGTGTGGTGGCAATGCTTTCTGGAGATACCGAAGTGAGCACTATAACTTCAAGGCCTGGATACTTGACAGACTGGCAATTTGATGACGTGACCAGCATGATGACAGGCTTTGCTGCTAAAGGATCATATACAAATCAATGTAACTTATCAGCAAGTACCAGCATAGTGGGTGGTGCAGATCACTCGCCTGTAAATGCTTCAAAACCCATCCTCCATCATAGTCTTAGTGAGGGCAGTCACCGTCAAATCAACATGTTGCACCAACAACACTACTATAATCACAGTCAACCGGACAAGGAGAGACATCCTTCAAGCATTAAGCCTCCCAAGTCTGTTAAAAGATTGAGAAGGGTTGGAGCTGGACAAGTAGTTCCTTCCCAAAAATTTGTGTCTAGCAATATAGATCAAGCAGGAGGGAGCTCAAGTGGTGTCAATTAA 2553 0.4113 MSFVSTLGEENPRKKSEHPAHLTQNQESELGLDSPQEHLGKEAINVAPLIDDSNIPIASGKGVRSCTQKRTVGCKCIFTIKYNVYGSIDRLKVRLVAKGFTQSYGINYQETFALVAKLNTTPVLFSLIANLDWLLYQLDVKNVFLNSNLKEELYIEIPPGLTNSNHNTDFSIPDYNFAVNCGGRQIISSNGIVYEGDDETLGPATYFVTDTKRWAVSNVGLFVGSTNLYKTHVSNLSTGTVDPELFRTARLSASSLRYYGLGLENGHYNVTLHFSETSILNSRSTWKSVGRRVFDIYIQGNLVLKDFDIRKEAGGASFRAVQREFRVLVSVNHLEIHLFWAGKGTCCIPPEQATYGPLISAISTTPDFTPTVSNKPPTSEKNRTGLIVGIVVGVGVVSFLSGLAGFCIIQRRKHQEDGNKELLGIDTKPHTFSYSKLRNATDNFNLDNKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFINEIATISSVQHRNLVKLYGCCIEGDKRLLVYEYLENKSLDQALFGNCLTLTWLTRYDICFGVARGLAYLHEESRLRIVHRDVKASNILLDYELIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALEIVCGRPTSDSSLKGEKMYLLEWAWHLHENNCIIELVDPRLSDFNEEEVKRIVGISLLCTQASPFLRPSMSRVVAMLSGDTEVSTITSRPGYLTDWQFDDVTSMMTGFAAKGSYTNQCNLSASTSIVGGADHSPVNASKPILHHSLSEGSHRQINMLHQQHYYNHSQPDKERHPSSIKPPKSVKRLRRVGAGQVVPSQKFVSSNIDQAGGSSSGVN 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2223 850 Pfam Protein tyrosine and serine/threonine kinase 445 710 IPR001245 GO:0004672|GO:0006468
Glsi04g2223 850 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Glsi04g2223 850 MobiDBLite consensus disorder prediction 830 850 - -
Glsi04g2223 850 CDD STKc_IRAK 450 711 - -
Glsi04g2223 850 SUPERFAMILY Protein kinase-like (PK-like) 427 730 IPR011009 -
Glsi04g2223 850 SMART serkin_6 444 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2223 850 MobiDBLite consensus disorder prediction 798 812 - -
Glsi04g2223 850 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 159 742 - -
Glsi04g2223 850 MobiDBLite consensus disorder prediction 798 850 - -
Glsi04g2223 850 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 65 167 IPR013103 -
Glsi04g2223 850 MobiDBLite consensus disorder prediction 1 34 - -
Glsi04g2223 850 Gene3D - 174 366 - -
Glsi04g2223 850 FunFam Putative LRR receptor-like serine/threonine-protein kinase 520 723 - -
Glsi04g2223 850 Gene3D Transferase(Phosphotransferase) domain 1 520 723 - -
Glsi04g2223 850 FunFam Leucine-rich repeat receptor-like protein kinase 412 519 - -
Glsi04g2223 850 ProSiteProfiles Protein kinase domain profile. 444 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2223 850 Gene3D Phosphorylase Kinase; domain 1 404 519 - -
Glsi04g2223 850 Pfam Malectin domain 176 362 IPR021720 -
Glsi04g2223 850 FunFam Leucine-rich repeat receptor-like protein kinase 174 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2223 Glsi-ChrGlsi04 74902870 74922396 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2223 175 783 Receptor kinase-like Gene Family AT1G56120 63.844 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g2223 PK_Tyr_Ser-Thr 2.4e-46 CL0016