Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2220 ATGCTGCCTCCTCCTCCTCCTTCTTCTTCATCAATACTCTTGGCTTTTCCACTTGCTGCTGCTGCTGCTGCTTGTGTCTTCCTCATCTGTTTGGTTGATGGAGTGGAAGCTCAAGCTGCAAACGCTACTACAGATCCTTCTGAAGCGAGAGCCTTGAATACAATCTTCAACAAATGGGGTATATCGGCATTGCAAAGTGGTGACAATATATGGAATATAAGCGGTGAATTATGCAGCGGAAAAGCCATAGACGACGTAGCCCTAATATTCGACTTCAACCCATTCATCAAATGCGATTGTTCCAATGGCACTATCTGCCATATTACTTCACTGGGTTTTTATGATTTGGATGTCGTTGGGGAAATTCCGGAAGAGCTATGGACTCTGACTTACCTCACCCAGTTGTATGTTTTATTCTTTTCATCAATTTTCCAAATTGGATTTACATTTCTGGCCAAAAAGAACCCCGAAAGGGATTTGAATTCTTGTATTAAGCTTCCTCAAATTGCAATTAGGTATATTACCAATAATTACTTGACGGGTTCTATATCTCCAGCCATTGGAAATCTAACTCGCATGCAGTACATGAACTTGGGCGCCAATCTTTTCTCGGGGGCGCTTCCGAAGGAGTTGGGAAATCTTACCGAGCTAATATCATTGGGTGTTGGGACAACCAACGTCGCAGGTTCACTCCCCCCTGAACTGGGACATCTGGTGAAATTAGAAGAACTCTACATTGATAGTTCAGGAATTAGTGGTCAGATTCCTTCCACATTTGCTAATCTTAAAAACCTGGTGATATTATGGGCTTCGGACACAGAGCTCACAGGCAGGATACCACACTTTATAGGGAATTGGCCCAAGCTGAAAGATTTGAGGTTTCAGGGTAATTCTTTTGAAGGCCCAATACCCTCATCATTTTCAAATCTGACTTCTCTTACACAGTTGAGAATAAGTGAAATATCTAATGGGAGCTCCTCACTGGCATTTATAAGGAATATGAAGTCTTTGACTGTCTTAGTACTGAGGAACAACAATATCTCAGATTCAATTCCATCCAATATCGGTCAATTTCAAAATTTGACCCAGCTGTTTCTTGGTAATAACAAACTCAGTGGTACTATCCCTACCCAGATAAGTTCATCTCTTCTCAACATAGACTTGTCATACAACTATCTATCGGGGAGGCTCCCTTCTTGGGTAAACAAACAAACTTTACAACTCAATTTGGTTGCCAACAACTTGACTATAGAAAGTAGCAGGAGTGAATGTGGTAAGAAAAGAAATTTATGGATATTTAATTGTCGAAATAGATCTGACAAGTGCATTGCTATTGCTATTGCTAGCTGCCATATGGGTTTGCCTTCTGGACTTGACTGTCTGCAACGAAATTTTCCCTGCAGTCGTGGTATTGGAAGATATTATGAGTTCGCAGTCAACTGCGGCAGTCATCAAATTACATCATCAAATGGAATTGTGTATGAAGGGGATGATGACACACTTGGTCCCGCTACATATTTTGTTACTGATACAAAGAGATGGGCAGTTAGCAATGTTGGATTATTTACTGGAAGTACCAATCCTCTTTACAAATCTCTTGTGTCTAATATGTCTACTGGTACTGTGGATCCAGAGCTCTTCCAAACAGCACGTCTCTCTGCTTCATCATTAAGATATTATGGCTTCGGGCTTCAAAATGGTGATTACAACATTACCCTCCATTTCTCAGAAACGTCTATTCTAAATTCTAGTACCACATGGAAAAGTGTTGGGAGACGGGTCTTTGACATATATATCCAGGTAAAACTTTATAAAGAAGTTCAGCCGTTCAGAAATTTCACACCCACTGTCAGTAACAAACCTCCAACAAATAAAAAGAACAGAACTGGTCTGATTGTGGGAATTGTTGTTGGCATTGGAGTTGTTAGCTTTCTGTCTATTCTCGTGGGTTTCTGTATCATTCGGCAAAGACAACATCACGGAGATGATAATGAAGATGACTTCAATCTTGGCAACAAGGTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTAATTGCTGTGAAACAATTATCTGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAACTGAGATTGCTACTATATCTGCTGTGCAACATCGAAATCTTGTTAAATTATATGGATGTTGCATTGATGGAAATAAAAGACTTCTTGTCTATGAGTATCTAGAAAACAAAAGTCTTGATCAAGCATTATTTGGAAATTGTTTAACGCTCACATGGCCCACACGCTATGATATCTGCATGGGTGTTGCGAGAGGTTTAGCTTATCTTCATGAAGAGTCACGGCTCCGTTTTGTACACCGTGATGTAAAGGCTAGTAACATTCTGCTTGATCATGAGCTTGTCCCTAAAATATCTGATTTTGGTTTGGCCAAATTATATGATGATAAAAAGACCCATATAAGCACCCGGGTGGCTGGGACAATTGGATATCTTGCTCCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATGTGTTTTCCTTTGGTGTCATGGCTCTAGAGATAGTTTGTGGGAGACCGAATTCTGATTCAAGCTTGGGAAGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCATCAGCATGAAAACAATTGTGTCATTGAACTGGCAGATCCTAGATTGTCAGATTTCAATGAGGAAGAAGTCAAAAGAATTGTAGGAATATCTCTTCTCTGCACTCAAACATCACCATTTTTACGGCCTTCGATGTCCCATGTGGTGGTGATGCTTTCTGGAAATATTGAAGTGAGCACTGTAACGTCAAGGCCTGGATACTTGACGGACTGGAAATTTGATGACTGA 2877 0.4081 MLPPPPPSSSSILLAFPLAAAAAACVFLICLVDGVEAQAANATTDPSEARALNTIFNKWGISALQSGDNIWNISGELCSGKAIDDVALIFDFNPFIKCDCSNGTICHITSLGFYDLDVVGEIPEELWTLTYLTQLYVLFFSSIFQIGFTFLAKKNPERDLNSCIKLPQIAIRYITNNYLTGSISPAIGNLTRMQYMNLGANLFSGALPKELGNLTELISLGVGTTNVAGSLPPELGHLVKLEELYIDSSGISGQIPSTFANLKNLVILWASDTELTGRIPHFIGNWPKLKDLRFQGNSFEGPIPSSFSNLTSLTQLRISEISNGSSSLAFIRNMKSLTVLVLRNNNISDSIPSNIGQFQNLTQLFLGNNKLSGTIPTQISSSLLNIDLSYNYLSGRLPSWVNKQTLQLNLVANNLTIESSRSECGKKRNLWIFNCRNRSDKCIAIAIASCHMGLPSGLDCLQRNFPCSRGIGRYYEFAVNCGSHQITSSNGIVYEGDDDTLGPATYFVTDTKRWAVSNVGLFTGSTNPLYKSLVSNMSTGTVDPELFQTARLSASSLRYYGFGLQNGDYNITLHFSETSILNSSTTWKSVGRRVFDIYIQVKLYKEVQPFRNFTPTVSNKPPTNKKNRTGLIVGIVVGIGVVSFLSILVGFCIIRQRQHHGDDNEDDFNLGNKVGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIDGNKRLLVYEYLENKSLDQALFGNCLTLTWPTRYDICMGVARGLAYLHEESRLRFVHRDVKASNILLDHELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVMALEIVCGRPNSDSSLGREKMYLLEWAWHQHENNCVIELADPRLSDFNEEEVKRIVGISLLCTQTSPFLRPSMSHVVVMLSGNIEVSTVTSRPGYLTDWKFDD 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2220 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Glsi04g2220 958 Gene3D - 474 626 - -
Glsi04g2220 958 CDD STKc_IRAK 674 935 - -
Glsi04g2220 958 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 232 323 - -
Glsi04g2220 958 Pfam Malectin domain 476 603 IPR021720 -
Glsi04g2220 958 SMART serkin_6 668 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2220 958 Pfam Protein tyrosine and serine/threonine kinase 669 934 IPR001245 GO:0004672|GO:0006468
Glsi04g2220 958 FunFam Leucine-rich repeat receptor-like protein kinase 657 743 - -
Glsi04g2220 958 Gene3D Ribonuclease Inhibitor 91 326 IPR032675 -
Glsi04g2220 958 Gene3D Ribonuclease Inhibitor 327 439 IPR032675 -
Glsi04g2220 958 SUPERFAMILY L domain-like 163 414 - -
Glsi04g2220 958 SUPERFAMILY Protein kinase-like (PK-like) 660 941 IPR011009 -
Glsi04g2220 958 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 28 957 - -
Glsi04g2220 958 FunFam Putative LRR receptor-like serine/threonine-protein kinase 744 947 - -
Glsi04g2220 958 Gene3D Transferase(Phosphotransferase) domain 1 744 946 - -
Glsi04g2220 958 Gene3D Phosphorylase Kinase; domain 1 664 743 - -
Glsi04g2220 958 ProSiteProfiles Protein kinase domain profile. 668 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2220 Glsi-ChrGlsi04 74739409 74758326 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2220 193 958 Receptor kinase-like Gene Family AT1G56120 53.118 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g2220 PK_Tyr_Ser-Thr 2.1e-46 CL0016