LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g2217	ATGATTGTGGGAATTGTTGTTGGCATTGGAGTTGTTAGCTTTCTGTCTATTCTTGTGGGTTTCTTTATCATTCGGCAGAGACAGCATCACGAAGATGGTAATGAAGAGCTTTTGGGTATTGATACAAAGCCATACACTTTCTGGTATTCTGAGTTGAGGAATGCTACAGATGACTTCAATCTTGGTAACAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTAATTGCTGTGAAACAACTATCTGTAGGATCCCATCAAGGAAAGAGCCAGTTCATAACAGAGATTGCTACTATATCTGCTGTGCAACATCGAAATCTTGTTAAATTATATGGATGTTGTATTGAAGGAAATAAAAGACTTCTTGTCTATGAGTATCTAGAAAACAAAAGTCTTGATCAAGCATTATTTGGAAATTGTTTAACGCTCACATGGCCCACACGCTATGATATCTGCATGGGTGTTGCGAGAGGTTTAGCTTATCTTCATGAAGAGTCACGGCTCCGTATTGTACACCGTGATGTAAAGGCTAGTAACATTCTGCTTGATCATGAGCTTGTCCCTAAAATATCTGATTTTGGTTTGGCCAAATTATATGATGATAAAATGACCCATATAAGCACCCGGGTGGCTGGGACAATTGGATATCTTGCTCCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATGTGTTTTCCTTTGGTGTTGTGGCTCTAGAGATAGTTTGTGGGAGACCGAATTCTGATTCAAGCTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCATCATCATGAAAACAATTGTGTAATTGAACTGGTAGATCCTAGACTGTCAGATTTCAATGAGGAAGAAGTCAAAAGAATTGTAGGGATATCTCTTTTGTGCACTCAAACATCACCATTTTTACGGCCATCGATGTCCCGTGTGGTGGCAATGCTTTCTGGAGATATTGAAGTGAGCACTGTAACTTCAAGGCCTGGATACTTGACGGACTGGAAATTTGATGACGTGACCAGCGTGATGACTGGCTTTGCTACTAAAGGATCAGATACAAGTCAATATAACACATCAGCAAGTACCAGCACAGTGGGTGGTGCAAATCACTCACCTGTAAATGCTTCAAACCCCATCCTCCATCATTCTCTTAGTGAGGGTAGGTAA	1200	0.4125	MIVGIVVGIGVVSFLSILVGFFIIRQRQHHEDGNEELLGIDTKPYTFWYSELRNATDDFNLGNKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGNKRLLVYEYLENKSLDQALFGNCLTLTWPTRYDICMGVARGLAYLHEESRLRIVHRDVKASNILLDHELVPKISDFGLAKLYDDKMTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALEIVCGRPNSDSSLEGEKMYLLEWAWHHHENNCVIELVDPRLSDFNEEEVKRIVGISLLCTQTSPFLRPSMSRVVAMLSGDIEVSTVTSRPGYLTDWKFDDVTSVMTGFATKGSDTSQYNTSASTSTVGGANHSPVNASNPILHHSLSEGR	399

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g2217	399	Pfam	Protein tyrosine and serine/threonine kinase	60	325	IPR001245	GO:0004672\|GO:0006468
	Glsi04g2217	399	ProSiteProfiles	Protein kinase domain profile.	59	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g2217	399	SMART	serkin_6	59	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g2217	399	MobiDBLite	consensus disorder prediction	361	399	-	-
	Glsi04g2217	399	CDD	STKc_IRAK	65	326	-	-
	Glsi04g2217	399	Gene3D	Transferase(Phosphotransferase) domain 1	135	337	-	-
	Glsi04g2217	399	MobiDBLite	consensus disorder prediction	361	392	-	-
	Glsi04g2217	399	FunFam	Leucine-rich repeat receptor-like protein kinase	28	134	-	-
	Glsi04g2217	399	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	178	190	IPR008271	GO:0004672\|GO:0006468
	Glsi04g2217	399	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	2	359	-	-
	Glsi04g2217	399	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	135	338	-	-
	Glsi04g2217	399	Gene3D	Phosphorylase Kinase; domain 1	21	134	-	-
	Glsi04g2217	399	SUPERFAMILY	Protein kinase-like (PK-like)	42	352	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g2217	Glsi-ChrGlsi04	74699546	74702182	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g2217	2	399	Receptor kinase-like Gene Family	AT1G56120	65.423	0.0	524

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Glsi04g2217		PK_Tyr_Ser-Thr	1.1e-47	CL0016