Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2215 ATGCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTGTTCTTCACGAATATTCCTGGCTTTTCCACTTGCTGCTGCCGCTGCTACTTGTTTCTTCTTCATCTGTTTGGTTGATGGAGTAGAAGCTCAAGCTGCAAACGCTACTACAGATCCTTCTGAAGGTTCCGTGGCGGCGGTGGCGGTGGCGCTGCGATTGGTGCACCGTTCCACATCAAAAAGAGGATGCCCCTTGATTGCGATTGCAGCTTTGAGTTCTCTCGGAATTCGAGAAAATCGGAATTTTTGGATATACATATCTAGGCGTTCTTTTGATTTGACTGATTCACCAATTTCTGGCAGGAGGGTTTATCAATTGGATGTTGTTGGGGAAATCCCAGAAGAGCTATGGACTCTGACTTACCTCACCAATTTGAATATTGGCAGGAATTATTTGATGGGTTCTCTACCTCCAGCCATTGGAAATCTAACTGGCATGCAGTATCTGAACGTAGGGATCAATTCTTTATCAGGGAAGCTTCCGAAGGAATTGGGAAACCTTACCGAGTTATTATCATTGGGTTTTGGGTCAAACAACTTCTCCGGTTCTCTCCCCCCTGAACTAGGAAATCTGCTGAAATTAGAACAACTCTACTTTGATAGTTCGGGAATTAGTGGTCAGATTCCTTCCACATTTGCTAATCTTAAAAACCTGGCGACAGTATGGGCTTCTGACACAGAGCTCACAGGCAGGATACCTGACTTTATAGGGAATTGGTCTAAGCTGACAACCTTGAGGTTTCAGGGTAATTCTTTTGAAGGCCCAATTCCCTCATCATTTTCAAATCTGACTTCTCTTACAGAGTTGAGAATAAGTGAAACATCTAATGAGAGCTCCTCACTGGCATTTATAAGGAATATGAAGTCTTTGACTGTCTTAGTACTGAGGAATAACAATATTTCTGATTCAATTCCATCCAATATCGGTGAATTTCAAAAATTGATTCAGCTGTTTCTTGGTAATAACAAACTCAGTGGTACTATCCCTTCCCAGATAAGTTCATCTCTTGTCAATATAGACTTGTCATACAACAGTCTATCAGGGAGCCTCCCTTCTTGGGTAAACCAACAAAATTTACAACTCAATTTGGTTGCCAACAACTTGGCTATACAAAGTTCATATGACAGTGGTTTGCCTTCTGGACTCTACTGTCTGCAGCGAAATTTTCCCTGCAATCGTGGTACTGGAATATATTATGACTTTGCCATCAAGTGTGGTGGTCCTCAAATTAAATCATCAAATGGAATTGTGTTTGGAATGGATAATGAGACACTTGGTCCTGCTACATATTTTGTTACTGATACAAAAAGATGGGCAATTAGCAATGTTGGATTATTTACTGGAAGCACCAATCCTCTTTACAAAAGCTCGGTGCCTAGGAGTCAGTTCACTGGTACTTTGGACTCAGAGCTCTACCAGACAGAACGACGCTCTGCTTCATCATTAAGATATTATGGCCTGGGGCTTGAAAATGGTGATTACAACATCGCCCTCCATTTTGCCGAAACATCTATTCTAGATTCTAGCACCACATGGAGAAGTCTTGGGAGACGGGTCTTTGATATATATATTCAGGGGAATCTTGTTTTGAAGGATTTTGACATAAAAAGAGAAGCTGGGGGGTCCTCTTTTAGAGCTGTCCAAAAGAAATTCCGGGTTCATGTGTCTGAAAACCATCTTGAGATCCATCTCTTTTGGGCTGGGAAAGGGACTGGTAGCATACCAACTCGAGGTACTTATGGTCCTGTGATTTCAGCAATCAGCGCAACCCCAGATTTCACACCCACTATCAGTAACAAACCTCCAACAAGTAAAAAGAACAGAACTGGTCTGATTGTGGGAATTATTGTTGGTGTTGGAGTTGTCAGCTTTCTGTCTATTCTTGGGGGTTTCTATATCATTCAGAGAAGAAAGCATCACGGATATGGTAACGAAGGGCTTTTAGGTATTGATAAAAAGCCATATACTTTCAGCTATTCTGAGTTGAGAAATGCTACAGATGACTTCAATCTTGGCAACAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAATGATTGCTGTGAAACAACTATCTGTAGGATTTCATCAAGGAAAGAGCCAATTTATAGCTGAGATTGCTACTATATCTGCTGTGCAACATCGTAACCTTGTTAAGTTATATGGATGTTGCATGGAAGGAAATAAAAGACTTCTTGTCTATGAGTATCTAAAAAACAAGAGTCTTGATCAAGCATTATTTGGAAGTTGTTTAATCCTCACATGGCCCACACGCTATGATATCTGCTTGGGTGTAGCGAGAGGTTTAGCTTATCTTCATGAAGAGTCACAGCTCCGTATTGTACACCGTGATGTAAAGGCCAGTAACATTATGCTTGATCATGAGCTTATCCCTAAAATATCTGATTTTGGTTTGGCCAAATTATATGATAAAATGACCCATATAAGCACCCAGGTGACTGGGACAATTGGATATCTTGCTCCGGAGTATGCCATGCCTGAGAAAGCGGATGTGTTTTCCTTTGGTGTTGTGGCTCTAGAGATAGTTTGTGGGAGGCCAAATTCTGATTCAAGCTTGGAAGGAGACAAGATGTATCTTCTAGAATGGGCTTGGCATCTGTATGTAAACAACTGTGTAATTGAACTGGCAGATCCTAAACTGTCAGATTTCAATGAAGAAGAAGTTAAACGAATTGTAGGGATATCTCTTCTGTGCACGCAAATGTCACCATTGTTACGTCCATCAATGTCCCGTGTGGTGGCGATGCTTTCGGGAGATATTGAAGTGAGCACTATAACTTCAAGGCCTGCATACTTGGCGGACTAG 2886 0.4165 MPPPPPPSSSSSCSSRIFLAFPLAAAAATCFFFICLVDGVEAQAANATTDPSEGSVAAVAVALRLVHRSTSKRGCPLIAIAALSSLGIRENRNFWIYISRRSFDLTDSPISGRRVYQLDVVGEIPEELWTLTYLTNLNIGRNYLMGSLPPAIGNLTGMQYLNVGINSLSGKLPKELGNLTELLSLGFGSNNFSGSLPPELGNLLKLEQLYFDSSGISGQIPSTFANLKNLATVWASDTELTGRIPDFIGNWSKLTTLRFQGNSFEGPIPSSFSNLTSLTELRISETSNESSSLAFIRNMKSLTVLVLRNNNISDSIPSNIGEFQKLIQLFLGNNKLSGTIPSQISSSLVNIDLSYNSLSGSLPSWVNQQNLQLNLVANNLAIQSSYDSGLPSGLYCLQRNFPCNRGTGIYYDFAIKCGGPQIKSSNGIVFGMDNETLGPATYFVTDTKRWAISNVGLFTGSTNPLYKSSVPRSQFTGTLDSELYQTERRSASSLRYYGLGLENGDYNIALHFAETSILDSSTTWRSLGRRVFDIYIQGNLVLKDFDIKREAGGSSFRAVQKKFRVHVSENHLEIHLFWAGKGTGSIPTRGTYGPVISAISATPDFTPTISNKPPTSKKNRTGLIVGIIVGVGVVSFLSILGGFYIIQRRKHHGYGNEGLLGIDKKPYTFSYSELRNATDDFNLGNKLGEGGFGPVYKGTLNDGRMIAVKQLSVGFHQGKSQFIAEIATISAVQHRNLVKLYGCCMEGNKRLLVYEYLKNKSLDQALFGSCLILTWPTRYDICLGVARGLAYLHEESQLRIVHRDVKASNIMLDHELIPKISDFGLAKLYDKMTHISTQVTGTIGYLAPEYAMPEKADVFSFGVVALEIVCGRPNSDSSLEGDKMYLLEWAWHLYVNNCVIELADPKLSDFNEEEVKRIVGISLLCTQMSPLLRPSMSRVVAMLSGDIEVSTITSRPAYLAD 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2215 961 CDD STKc_IRAK 687 943 - -
Glsi04g2215 961 SMART serkin_6 681 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2215 961 FunFam Leucine-rich repeat receptor-like protein kinase 651 756 - -
Glsi04g2215 961 Gene3D Phosphorylase Kinase; domain 1 646 756 - -
Glsi04g2215 961 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 114 956 - -
Glsi04g2215 961 Pfam Protein kinase domain 682 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2215 961 Gene3D - 411 603 - -
Glsi04g2215 961 FunFam Putative LRR receptor-like serine/threonine-protein kinase 757 955 - -
Glsi04g2215 961 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 114 196 - -
Glsi04g2215 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 800 812 IPR008271 GO:0004672|GO:0006468
Glsi04g2215 961 SUPERFAMILY L domain-like 121 380 - -
Glsi04g2215 961 Gene3D Ribonuclease Inhibitor 120 398 IPR032675 -
Glsi04g2215 961 FunFam Leucine-rich repeat receptor-like protein kinase 410 603 - -
Glsi04g2215 961 Gene3D Transferase(Phosphotransferase) domain 1 757 954 - -
Glsi04g2215 961 ProSiteProfiles Protein kinase domain profile. 681 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2215 961 Pfam Malectin domain 412 599 IPR021720 -
Glsi04g2215 961 SUPERFAMILY Protein kinase-like (PK-like) 664 949 IPR011009 -
Glsi04g2215 961 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 197 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2215 Glsi-ChrGlsi04 74632748 74650245 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2215 158 961 Receptor kinase-like Gene Family AT1G56120 61.722 0.0 1032
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g2215 Pkinase 3e-42 CL0016