Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2208 ATGAGTGCTTTGGGCGGAGGAAGGAGAAATCAGGTTCCAGAATCTTTGGGTTTGAAAGCAAGGTACTCATTCATGGTTTGTACTGATACTTGTTTTTTGGGGACTGGGATGAAGGGTTTGAGGAGTTTTAAGATGTTGACTAGTGGTCCTGCTAAAAAGATATCATTTAGTCGATTCATTAGTTATGGCGATTTGATTGTTCCTGGTTGCTTGGTTCTGGAATCTGGAGCTGGAAGTGGATCTTTAACTACTTCCCTTGCAAGGGCAGTAGCTCCTACAGGACATGTCTATACATTTGATTTCCATGAACAAAAGGCTGCGTCAGCTAGGGAAGATTTTGAGCGGACAGGACTAAACAGCTTAATCAGTGTGGATGTGAGGGACATCCAGGGTGATGAATTTCCAGATGAATATGCTGGTTTGATTGATGCTGTATTTCTGGATCTACCTCCACCTTGGCAAGCCATTCCTTCAGCTGCAAAAATGCTTGGGCTTGTGGGACACCTTCTTTTTTTCCGCTTATGCATGGGGGCTCTCTCTCTCTCCCTCCTGCAAGATATAAGGACATTTGAGGTGCTCCTACGCACATATGAAATTCGAGAAGAAAGAATGGATGGCGTTTCAAGGGAGGGTAGTAGTCTTAATGGTTCTCTCCCTTGCAAGAGGAGGCAATGTGCTGATGGAAGCAACGTGCTCACCAATCCTATTCCTTCTGTTATGGCTAGACCTAGTGCTGAAGCTAGAGGCCACACTGGCTATTTGACATTTGCAAGACTCAAATGCCTCTCATTAAGAGTGCAGACATTTTCTGGCAGGAGGGTTTATGAATTGGATCATTGCATGTTGTTGGGGAAATCCCAGAAGAGGAATATTGGCAGGAATGACTTGATGGGTTCTCTACCTCCAGCCATTGGGAAATCTAACTGGCATGCGGTACCTCTGGTGTGGGCACTCCATGGCCTTTTTATTCTTATCTCTGCAGCTCTATCTCTGCTGGATCTCATCAACTTCATAAGGATGCCTCCTCCTCCTCCTTCTTCTTCACCAATACTCTTGGCTTTTCCACTTGCTGCTGCTGCTGCTGCTTGTGTCTTCCTCATCTGTTTGGTTGATGGAGTGGAAGCTCAAGCTGCAAACGCTACTACAGATCCTTCTGAAGTTTCTGGCAGGAGGGTTTCTGCATTGGATGTTGTTGGGGAAATCCCAGAAGAGCTATGGACTCTGACTTACCTCACCTATTTGAAAATTGACCAGAATTACTTGACGGGTTCTCTACCTCCAGCCATTGGAAATCTAACTCGCATGCAGTACTTGAGCTGGGGCGTCAATGCTTTATCGGGGGAACTTCCGAAGGAATTGGGTAATCTTACCGAGTTAATACTATTGGGTTCTGGGTCAAACAACTTCTCAGGTTCTCTGCCCCCTGAACTAGGAAATCTGGTGAAATTAGAACAACTCTACCTTGATAGTTCAGGAATTAGTGGTCAGATTCCTTCCACATTTGCTAATCTTAAAAACCTGGTGACATTATGGGCTTCAGACATGGAGCTCACAGGCAGAATACCGGACTTTATAGGGAATTGGTCTAACCTGACAACCTTGAGGTTTCAGGGTAATTCTTTTGAAGGCCCAGTACCCTCATCATTTTCAAGTCTGACTTTTCTTAGCGAGTTGAGAATAAGTGAAATATCTAATGGGAGCTCCTCACTGGCATTTATAAGGAATATGAAGTCTTTGACTGTCTTAGTACTGAGGAACAACAATATTTCAGATTCAATTCCATCCAATATTGGTGAATTTCAATTTTTGACCCTGCTGTTTCTTGGTAATAACAAACTCAGTGGTACTATCCCTACCCATATAAGTTCATTTCCTGTCAACATAGACTTGTCATACAACAATCTATCAGGGAGCCTCCCTTCTTGGGTAAACCAACGAAATTTAGATCTCAATTTGGTTGCCAACAACTTGACTATAGAAAGTTCAAATATCAGTGGTTTGCCTCCTGGACTCAACTGTCTGCAGCGAAATTTTCCCTGCAATCATGGTATTGTAAGATATTATGACTTTGCAGTCAAGTGTGGTGGTCCTCCAATTACATCATCGAATGGATTTGTGTATGAAATGGATATGGACAAACTTGGTCCTGCTAACTATTTTGTTCCTGAAACAAACAGATGGGCAATTAGCAATGTTGGAGTATTTACTGGGAGGGCTAATCCTTTTTACGAAAGTATTGTGTCTGTTGAGAACACTAGTATTGTGGATTCGCTCTTGCTGACAGCACGGCTCTCTGCTTCATCATTAAGATATTATGGCCTAGGGCTTGAAAATGGTGATTACGACATCACTCTTCATTTTGCAGAAACATCTATTCCAAATTCTAGGACCACATGGAGAAGTCTTGGGAGACGGGTCTTTGATATATATATCCAGGGGACTTGCTGCATACCAGAGCATGGTACTTATGGTCCTTTGATTTCAGCAATCAGTGCTACCCGAGATTTCAGACCCATTGTCAGCAACAAAACTCCAACAATTAAAAAGAAGAGAACCCGTCTGATTGTGGGAATTGTTATTGGTGTTGGAGTAGTAAGCTTTCTGTCTGTTCTTGCGGGTTTCAGTATCATTCAGAGAAGAAAGCATCACGAAGATGGTAGTGAAGAGCTTTTAGGTATTGATATGAAGCCGTACACTTTCAGCTATTCTGAGTTAAGGAATGCTACATATGACTTCAATCTTGGTAACAAGCTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTCAATGATGGAAGAATAATTGCTGTGAAACAACTATCTGTAGGATCTCATCAAGGAAAGAGCCAGTTCATAACAGAGATTGCTACTATATCTGCTGTGCAACATCGGAATCTTGTTAAATTATATGGATGTTGCATTGAAGGAAATAAAAGACTTCTTGTCTATGAGTATCTAGAAAACAAGAGCCTTGATCAAGCATTATTTGGAAATGGTTTAACGCTCACATGGCCCATTCGCTATAGTATCTGTTTAGGTGTTGCAAGAGGTTTAGCTTATCTTCATGAAGAGTCATGTCTCCGTATTGTACACCGTGATGTAAAGGCTAGTAACATTCTGCTTAATCATGAGTTTATCCCTAAAATATCTGATTTTGGCTTGGCCAAATTTTATGATGATAAAAAGACCCATATAAGCACCCGGGTTGCTGGGACAATTGGATATCTTGCTCCGGAGTATGCCTTGCGTGGACGCCTTACTGAGAAAGTAGACGTTTTTTCCTTTGGTGTTGTGGCTTTAGAGATAGTTAATGGGAGGTCGAATTCTGATTCAAGCTTGGAAGGAGACAAGATGTATCTTTTAGAATGGGCCTGGCATTTGCATGAAAGCAACTCCGTAATTGAACTGGTAGATCCTAAACTGTCAGATTTCAATGAGGAAGAAGTTAAACGAATTGTAGGGATATCTCTTCTATGCACGCAAATGTCACCATTTTTACGTCCATCGATGTCCCGTGTGGTTGCAATGCTTTCTGGAGATATTGAAGTGACCACTGTAACTTCAAGGCCTGCATACTTGGTGGACTGGAAATTTGATGATGTGACCAGCATGGTGACTAGCTTTGCAACTAAAGGATTCGATCCAAGTCAATATAACCCATCAACAAGTACTAGTATAGTGGGTGGTCCAAATCACTCTCCCGTAAGTGCTTCACAACCCATCCTCCATGATAATCTTAGTTAG 3750 0.4224 MSALGGGRRNQVPESLGLKARYSFMVCTDTCFLGTGMKGLRSFKMLTSGPAKKISFSRFISYGDLIVPGCLVLESGAGSGSLTTSLARAVAPTGHVYTFDFHEQKAASAREDFERTGLNSLISVDVRDIQGDEFPDEYAGLIDAVFLDLPPPWQAIPSAAKMLGLVGHLLFFRLCMGALSLSLLQDIRTFEVLLRTYEIREERMDGVSREGSSLNGSLPCKRRQCADGSNVLTNPIPSVMARPSAEARGHTGYLTFARLKCLSLRVQTFSGRRVYELDHCMLLGKSQKRNIGRNDLMGSLPPAIGKSNWHAVPLVWALHGLFILISAALSLLDLINFIRMPPPPPSSSPILLAFPLAAAAAACVFLICLVDGVEAQAANATTDPSEVSGRRVSALDVVGEIPEELWTLTYLTYLKIDQNYLTGSLPPAIGNLTRMQYLSWGVNALSGELPKELGNLTELILLGSGSNNFSGSLPPELGNLVKLEQLYLDSSGISGQIPSTFANLKNLVTLWASDMELTGRIPDFIGNWSNLTTLRFQGNSFEGPVPSSFSSLTFLSELRISEISNGSSSLAFIRNMKSLTVLVLRNNNISDSIPSNIGEFQFLTLLFLGNNKLSGTIPTHISSFPVNIDLSYNNLSGSLPSWVNQRNLDLNLVANNLTIESSNISGLPPGLNCLQRNFPCNHGIVRYYDFAVKCGGPPITSSNGFVYEMDMDKLGPANYFVPETNRWAISNVGVFTGRANPFYESIVSVENTSIVDSLLLTARLSASSLRYYGLGLENGDYDITLHFAETSIPNSRTTWRSLGRRVFDIYIQGTCCIPEHGTYGPLISAISATRDFRPIVSNKTPTIKKKRTRLIVGIVIGVGVVSFLSVLAGFSIIQRRKHHEDGSEELLGIDMKPYTFSYSELRNATYDFNLGNKLGEGGFGPVYKGTLNDGRIIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGNKRLLVYEYLENKSLDQALFGNGLTLTWPIRYSICLGVARGLAYLHEESCLRIVHRDVKASNILLNHEFIPKISDFGLAKFYDDKKTHISTRVAGTIGYLAPEYALRGRLTEKVDVFSFGVVALEIVNGRSNSDSSLEGDKMYLLEWAWHLHESNSVIELVDPKLSDFNEEEVKRIVGISLLCTQMSPFLRPSMSRVVAMLSGDIEVTTVTSRPAYLVDWKFDDVTSMVTSFATKGFDPSQYNPSTSTSIVGGPNHSPVSASQPILHDNLS 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2208 1249 ProSiteProfiles tRNA (adenine(57)-N(1)/adenine(58)-N(1) or adenine(58)-N(1)) (EC 2.1.1.219 or EC 2.1.1.220) family profile. 60 260 IPR014816 GO:0016429|GO:0030488|GO:0031515
Glsi04g2208 1249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1031 1043 IPR008271 GO:0004672|GO:0006468
Glsi04g2208 1249 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 812 1212 - -
Glsi04g2208 1249 Pfam Protein tyrosine and serine/threonine kinase 913 1178 IPR001245 GO:0004672|GO:0006468
Glsi04g2208 1249 Gene3D Vaccinia Virus protein VP39 57 261 IPR029063 -
Glsi04g2208 1249 Gene3D Phosphorylase Kinase; domain 1 873 987 - -
Glsi04g2208 1249 CDD STKc_IRAK 918 1179 - -
Glsi04g2208 1249 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 389 473 - -
Glsi04g2208 1249 ProSiteProfiles Protein kinase domain profile. 912 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2208 1249 SMART serkin_6 912 1168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2208 1249 Gene3D - 688 860 - -
Glsi04g2208 1249 Gene3D Transferase(Phosphotransferase) domain 1 988 1191 - -
Glsi04g2208 1249 Pfam tRNA methyltransferase complex GCD14 subunit 66 258 IPR014816 GO:0016429|GO:0030488|GO:0031515
Glsi04g2208 1249 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 259 IPR029063 -
Glsi04g2208 1249 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 474 566 - -
Glsi04g2208 1249 Gene3D Ribonuclease Inhibitor 392 485 IPR032675 -
Glsi04g2208 1249 FunFam Putative LRR receptor-like serine/threonine-protein kinase 988 1191 - -
Glsi04g2208 1249 FunFam Leucine-rich repeat receptor-like protein kinase 881 987 - -
Glsi04g2208 1249 SUPERFAMILY Protein kinase-like (PK-like) 895 1210 IPR011009 -
Glsi04g2208 1249 Gene3D Ribonuclease Inhibitor 486 678 IPR032675 -
Glsi04g2208 1249 Pfam Malectin domain 689 818 IPR021720 -
Glsi04g2208 1249 MobiDBLite consensus disorder prediction 1221 1249 - -
Glsi04g2208 1249 SUPERFAMILY L domain-like 390 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2208 Glsi-ChrGlsi04 74451597 74489025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2208 395 565 Receptor kinase-like Gene Family AT1G56120 28.161 6.60e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g2208 PK_Tyr_Ser-Thr 1.2e-45 CL0016