Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2203 ATGGGGAAAGGAAGAGCTCCATGCTGTGATAAGACTCAAGTGAAGAGAGGCCCTTGGAGCCCTGAAGAAGACCTTAAGCTCATCACCTTTATCCACAAACATGGCCATGAAAACTGGCGTGCTCTCCCTAAACTAGCAGTAATACTACGATTGCGGCCACCGCACCCGGCAATTCCGGTGTGGTCAAAGATAGCATCCCATTTGCCTGGTAGAACAGACAACGAGATCAAGAATGTTTGGAACACCCACTTAAAGAAAAGATTGCCCAAGCAGCGGGAATCATCCGCAACTTTCTCCTCTGATTCACTAATTTCCTCAAATGGGAGTGAACATAATAATAATGAAGAAGCATCCCCAGTGACAGTGGCAGAAAAACAAGTGTCTGATGATGAACTTAATGGCATCATCATCCCTGAGGATCAAAAAGAGTCACCAACTTCATTTTCTTCTTTTGATTCAAACCTCTCAAACTCAAGCTACATTGTTAACTACGAACCAGAAGAACAAATGGGTAATTCTCTATTAGACGAACTGCTTGAAATACCAATGGAGTCAGATTATGACATTTGGAACATGCTAGATAACTCAGAATCCTTAATCCAGTCAAATCTGAGAGAAGAGATCGGTGTTGAAGATGATGCTGAAAAAAGGAAATGGTTCAACGACTTGGAGAATGAGCTTGGCTTAGGTGCAATAGATCAGGAAAACCAGGATGATGCAGCTGAGCAAGTAACGAAAAAGTCAGAATTACTTGATTCAGACATGGGTTTGGCTTTTCTTGAATCATCATGGCCCTCTTGGCCTTGA 807 0.4263 MGKGRAPCCDKTQVKRGPWSPEEDLKLITFIHKHGHENWRALPKLAVILRLRPPHPAIPVWSKIASHLPGRTDNEIKNVWNTHLKKRLPKQRESSATFSSDSLISSNGSEHNNNEEASPVTVAEKQVSDDELNGIIIPEDQKESPTSFSSFDSNLSNSSYIVNYEPEEQMGNSLLDELLEIPMESDYDIWNMLDNSESLIQSNLREEIGVEDDAEKRKWFNDLENELGLGAIDQENQDDAAEQVTKKSELLDSDMGLAFLESSWPSWP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2203 268 ProSiteProfiles Myb-like domain profile. 11 84 IPR001005 -
Glsi04g2203 268 SMART sant 15 86 IPR001005 -
Glsi04g2203 268 Gene3D - 13 90 - -
Glsi04g2203 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 88 IPR017930 -
Glsi04g2203 268 CDD SANT 18 84 IPR001005 -
Glsi04g2203 268 MobiDBLite consensus disorder prediction 93 121 - -
Glsi04g2203 268 SUPERFAMILY Homeodomain-like 14 80 IPR009057 -
Glsi04g2203 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 61 197 - -
Glsi04g2203 268 MobiDBLite consensus disorder prediction 87 125 - -
Glsi04g2203 268 Pfam Myb-like DNA-binding domain 16 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2203 Glsi-ChrGlsi04 74347600 74349556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2203 1 88 MYB Transcription Factor Family AT1G56160 61.017 5.99e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi04g2203 Myb_DNA-binding 5e-14 CL0123