Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2178 ATGCAGAATCAACATCAATACAAAACCACAGAACCTAGAAATGAGGAATTCTATCCTGCATCACAGTCAATTATGCAGGACCACCTGGATGGCATGTATATTAATACAAGACCTTCTGACCATCTTATATCAGAAAATAAACCTGTACTTAATTACTCCATTCAGACTGGTGAGGAATTTGCACTTGAATTTATGCGAGATAGGGTGAATCTCAGGAAGCCTGTCTTTTCGAATATAGTGGGTGATCCCAAAGGCATTTTAGGCATCAGTCATCCAGGATCTGAAATTGGGCCAGATATTTCTATGCTCACAAAAGCTGACAAAGATCCAAAAGAATTTGAAAAAAGGAGTTCTTCTATGAATCAGGACAGAAGCAATTATGGGTCAGTTAGATCAATACCTAGAAATCCATCTAATCAAGATAATAACCGAGTCTTTCATGGTATTGCCTCTTCTGGAGCTTCTGACAACTCATCAATAATGTTGAAGGTTCTTTGCAGCTTCGGTGGTAGAATATTACCACGGCCCAGTGATGGAAAGCTTAGATATGTTGGGGGTGAAACACGTATTATTTGTATAAGAAAGGACACACATTGGCAGGAGTTTATGCAGAAAATGTCATCTATCTATAATGAGGCTCATGTAATAAAGTATCAGCTCCCTGGGGAAGATCTGGATGCATTGGTTTCAGTATCTTGTGATGAGGATCTGAGGAATATGCTAGAGGAATGTCATGATCTTGGAAACAAAGAAGGGTCACAAAAGCTTAGGGTGTTTATGTTTTCCATGAATGATTTGGACGATACACAGTTTGGTCTGGGTAGCGATGATGGTGATTCTGAAATCCAGTATGTAGTTGCTGTCAATGGCATGGACTTGGGATCAAGAAACCATTCAGCCCTTCATGGTGCTACCACTTTTGAAAATAATATACATGATTTTGATGGACTGGATATTGAGAGAGAGGGTAATAGAGTTCTGATGGAATCAGTTGGTGTCACCAGTTCTTCCTTGACTGGCAATGTTGACTCATCATTGACAATTCAGTCTTCACAATCAATGCTACCAAATGAAACTTATCCAATGTTTTATAGTGGCCAAAGCATTCACCATGGAGAATCTAGTCAATATCCAGTGCACCATCGCCTTGATCCTTCTAACAACTCAACTCTCGGAGAGATTCCAGTTTCTGTGCCTACTCATGATCTTATTAATCAAGGAATTATGAATGAAGGGCGTCCCCCTAGTGAGTTTCAAGTAAAAAATCCATATATGCCAGCAATGCAGGTAAAGAAAATGGGTGACTGTTCCATTCAGCATGAAAGTGACCCTGGAAAAGTTTTCTCCTTGGAAATACCATATCCTGTTCCTTCATTGCCATTTGATGGCAATTTGCAAGGTAATTTTTCTGAAGCATCAGTTACAATTCCCAAACCAGAGGGGCATCTGCCTACATTGCCTTTAAAAAACCAGCATTATGAAGGGGCCTCCTCATTGGTTGATGCTATGAATTCCACTCAGATTCCAAAATCTGGTGAAGATGATCCTCATCCTACCTCTACTAATGAATTTGATCCTGATTATGTTGATGCCAAGTCCAATGTGATTGATTTGAGTTGCCTTGAACCACCCACGCTCCCCAACAGAATCTATTATTCAGAGAGAATTCCCAGGGAGCAAGCGGAGTTGCTTAACCGATCCACGAAGTCAGATGATGCGCATGGTTCTCAGTTACTTGTGTCAGACTTACTTTCTGGCTTCAATTGGCAAAGTTCTGTTACAGAATCCAGTGACCAATTACATGATGGAAATCTGTCAAATCTGACCCCGGTGGTAAGCTCAACAGCAAAGCTTTTGCATGCAGATGGTGAAGTCATTGACAGCCTTGCCCAACTACAAAATTACAAACAGTTTCCTGATTCAACTAGTCAGATGAATTCAAAGCTACTGCAGCCTGTAGATTCTGAGTTGAAGCAGGTATTAGTACACAATGCAGAAAATAAAGTTGCCGCAAGTGAGAATCAGTTTCCTTCTGCTGAACATAATGAGAACCCAGCATCTAATTTTCCAGACCTTAATTGGAGTGAGGCTTCTACCATGGAATCCAATTACAATGCTAAGGTCCAACCGCAGTCTTTTTCTTCAGCTGGGAACTCAAACCAAGAAATTTCTCATGATTTTCCCTCAGATGCTATTTCCAGGCCAGTTCAGGGTGACATTATGATTGATATTGATGACAGGTTTCCCCGGGATTTCCTTTATATGTTCTCCAAAGCAATAATTTCTGAAGATTCATCAAATATTGGTCCATTACCAACAGATGGAGCGGGTTTGAGCTTAAACATGGAAAACCATGAACCTAAAAGTTGGTCATATTTTCAAAAGTTGGCACAAGATGGGTTTGATAACGTGTCTCTTATTGATCAGGATCATCTTGGTTTTTCATCTGCAATGAGAATATTACAAGAAGGAGATAGAAGATCTCAGCAATTTGCTCCTCAACTGGCTGATGGAGTTTCAGTTGGCCATATTGAACCCTACCTTAATTTAGGTGAAGAAAATCATGAAACCTTACCTGTATCAACTATAATGGAGGCCACTGTTCTGCAACCAAACTATGATCATTCCCAAGTTAAGGACACTGAAAATAAGAACTTGGATGCCATGATGGAAAATAGAAGACAAAAAGAGTCTGAGTATGAGGTTGGCAAGCCTGAAATTAGGAATATTGGTCTTCCCCCACAAGATCGTTCTTTGGGGGATTTAGACATCAGTACTTTGCAGCTCATAAACAATGAAGATCTTGAAGAGCTGAAAGAGCTGGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAGTGGCGAGGAACAGATGTTGCCATTAAAAGAATAAAGAAAAGCTGCTTCACTAATCGATCTTCAGAGCAAGAGAGACTGACTGTGGAGTTCTGGCGGGAAGCTGACATACTTTCCAAGCTTCATCATCCAAATGTGGTGGCATTTTATGGTGTAGTGCAGAATGGACCTGGAGGAACATTAGCTACCGTTGCAGAGTTTATGGTTGATGGTTCTCTTCGGCATGTTTTGCTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCCATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAACATAGTGCATTTTGACTTGAAATGTGACAATTTGCTTGTGAACTTGAAGGATCCTTTACGGCCAATATGCAAGGTTGGCGACTTTGGTCTGTCAAAAATCAAACCAAATACCCTGGTTTCTGGTGGTGTGCGTGGAACCCTACCTTGGATGGCACCAGAGTTGCTGAACGGAAGCAGCAATAAGGTCTCAGAAAAGGTTGATGTGTTCTCTTTTGGCATTGTGTTGTGGGAGATTCTTACTGGTGAGGAACCATATGCTAATATGCATTATGGTGCAATCATAGGAGGTATTGTAAATAACACATTAAGACCCACAATCCCCAGTTATTGTGATCCCGAGTGGAGAACCCTAATGGAGCAGTGTTGGGCACCTAATCCTGCAGTCAGGCCATCCTTCACAGAAATTGCCCGCCGCTTACGAGTGATGTCTGCAGCTGCTAGTCAGACCAAAGGACAGGGTCACAAAGTATCTAAATGA 3654 0.4119 MQNQHQYKTTEPRNEEFYPASQSIMQDHLDGMYINTRPSDHLISENKPVLNYSIQTGEEFALEFMRDRVNLRKPVFSNIVGDPKGILGISHPGSEIGPDISMLTKADKDPKEFEKRSSSMNQDRSNYGSVRSIPRNPSNQDNNRVFHGIASSGASDNSSIMLKVLCSFGGRILPRPSDGKLRYVGGETRIICIRKDTHWQEFMQKMSSIYNEAHVIKYQLPGEDLDALVSVSCDEDLRNMLEECHDLGNKEGSQKLRVFMFSMNDLDDTQFGLGSDDGDSEIQYVVAVNGMDLGSRNHSALHGATTFENNIHDFDGLDIEREGNRVLMESVGVTSSSLTGNVDSSLTIQSSQSMLPNETYPMFYSGQSIHHGESSQYPVHHRLDPSNNSTLGEIPVSVPTHDLINQGIMNEGRPPSEFQVKNPYMPAMQVKKMGDCSIQHESDPGKVFSLEIPYPVPSLPFDGNLQGNFSEASVTIPKPEGHLPTLPLKNQHYEGASSLVDAMNSTQIPKSGEDDPHPTSTNEFDPDYVDAKSNVIDLSCLEPPTLPNRIYYSERIPREQAELLNRSTKSDDAHGSQLLVSDLLSGFNWQSSVTESSDQLHDGNLSNLTPVVSSTAKLLHADGEVIDSLAQLQNYKQFPDSTSQMNSKLLQPVDSELKQVLVHNAENKVAASENQFPSAEHNENPASNFPDLNWSEASTMESNYNAKVQPQSFSSAGNSNQEISHDFPSDAISRPVQGDIMIDIDDRFPRDFLYMFSKAIISEDSSNIGPLPTDGAGLSLNMENHEPKSWSYFQKLAQDGFDNVSLIDQDHLGFSSAMRILQEGDRRSQQFAPQLADGVSVGHIEPYLNLGEENHETLPVSTIMEATVLQPNYDHSQVKDTENKNLDAMMENRRQKESEYEVGKPEIRNIGLPPQDRSLGDLDISTLQLINNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTNRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQNGPGGTLATVAEFMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKPNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDPEWRTLMEQCWAPNPAVRPSFTEIARRLRVMSAAASQTKGQGHKVSK 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2178 1217 ProSiteProfiles Protein kinase domain profile. 935 1200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2178 1217 SMART serkin_6 935 1201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2178 1217 Pfam PB1 domain 178 260 IPR000270 GO:0005515
Glsi04g2178 1217 CDD PB1_UP2 165 261 - -
Glsi04g2178 1217 MobiDBLite consensus disorder prediction 107 141 - -
Glsi04g2178 1217 Gene3D Phosphorylase Kinase; domain 1 928 1022 - -
Glsi04g2178 1217 SMART PB1_new 176 263 IPR000270 GO:0005515
Glsi04g2178 1217 SUPERFAMILY Protein kinase-like (PK-like) 926 1197 IPR011009 -
Glsi04g2178 1217 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 181 263 - -
Glsi04g2178 1217 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1060 1072 IPR008271 GO:0004672|GO:0006468
Glsi04g2178 1217 Gene3D Transferase(Phosphotransferase) domain 1 1023 1216 - -
Glsi04g2178 1217 Coils Coil 879 899 - -
Glsi04g2178 1217 PRINTS Tyrosine kinase catalytic domain signature 1017 1030 IPR001245 GO:0004672|GO:0006468
Glsi04g2178 1217 PRINTS Tyrosine kinase catalytic domain signature 1169 1191 IPR001245 GO:0004672|GO:0006468
Glsi04g2178 1217 PRINTS Tyrosine kinase catalytic domain signature 1054 1072 IPR001245 GO:0004672|GO:0006468
Glsi04g2178 1217 PRINTS Tyrosine kinase catalytic domain signature 1125 1147 IPR001245 GO:0004672|GO:0006468
Glsi04g2178 1217 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1023 1215 - -
Glsi04g2178 1217 SUPERFAMILY CAD & PB1 domains 177 269 - -
Glsi04g2178 1217 PANTHER SERINE-THREONINE PROTEIN KINASE 206 1199 - -
Glsi04g2178 1217 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 928 1022 - -
Glsi04g2178 1217 Gene3D - 180 263 - -
Glsi04g2178 1217 MobiDBLite consensus disorder prediction 711 730 - -
Glsi04g2178 1217 ProSitePatterns Protein kinases ATP-binding region signature. 941 966 IPR017441 GO:0005524
Glsi04g2178 1217 CDD STKc_MAP3K-like 941 1198 - -
Glsi04g2178 1217 Pfam Protein tyrosine and serine/threonine kinase 936 1198 IPR001245 GO:0004672|GO:0006468
Glsi04g2178 1217 MobiDBLite consensus disorder prediction 711 727 - -
Glsi04g2178 1217 MobiDBLite consensus disorder prediction 120 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2178 Glsi-ChrGlsi04 73670045 73679343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2178 22 1127 MAP Kinase Kinase Kinase AT1G79570 43.708 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Glsi04g2178 PK_Tyr_Ser-Thr 1.1e-61 CL0016