Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi04g2169 | ATGCATGAGTTTTATCAACTAGTCGAGTTCTTTTGGCGTCTTGTGGGCAAAAAAACGATAGAGCAGGGACAAGTGGGTGGTAGCTATAGAGCAGCTGTTTCTTCCCAGAGTTCCCCACGCATCCCAAGTGCCTTTAAACTTTTGCTCTTTATATTGGAGGTATCTGAATGCATTTACCTCGTTCACTTCACCCATATTTCTTGTTGTTCGCCCCAACTCTTAGTTCCCATTTCAGTAGGCTTAGTTCAGCAGTCAGCCCAACCATCTGAGTTGTTTATGCATGGCTTGGAACCTACGGAGGCAAGGAGAATAGAATTGTACCTGAAACTTTTGTTGGTTTCCTGTGGTCTTTTGGGGGCCTCTCATTCAGAAAATTGCTTGACTTGTCGGTATCTTAGTTACTATGTATGTGTGGTGTGTGATATTGGGGGAAAGTTGCTTTGCTGTGATACTTGCCCGCGTACTTATCATCTCAAATGCCTTGATCTTCCGTCTATTCCTAACGGAGACTGGCAATGCCCACATTGCCGTGCTGATGATGATGAGTTTTCAAAGCCAATCAAATTTCTTTCAAAGGTTTCCAAAAAAGGCATCTCATCCAAGAAAGTGAAAGAGGCCTCTGGTTTGTCAGTTCCCAAGAGCAAGTCACAACTAGTCTATGCATATCGCCTTTTGCCAAGGAATGCCAAGGAAGAAAAATTTATGAAGGCCCTGAACCCAAAGTAG | 726 | 0.4366 | MHEFYQLVEFFWRLVGKKTIEQGQVGGSYRAAVSSQSSPRIPSAFKLLLFILEVSECIYLVHFTHISCCSPQLLVPISVGLVQQSAQPSELFMHGLEPTEARRIELYLKLLLVSCGLLGASHSENCLTCRYLSYYVCVVCDIGGKLLCCDTCPRTYHLKCLDLPSIPNGDWQCPHCRADDDEFSKPIKFLSKVSKKGISSKKVKEASGLSVPKSKSQLVYAYRLLPRNAKEEKFMKALNPK | 241 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi04g2169 | 241 | Pfam | PHD-finger | 137 | 178 | IPR019787 | - | |
| Glsi04g2169 | 241 | ProSiteProfiles | Zinc finger PHD-type profile. | 134 | 179 | IPR019787 | - | |
| Glsi04g2169 | 241 | SMART | PHD_3 | 136 | 177 | IPR001965 | - | |
| Glsi04g2169 | 241 | SUPERFAMILY | FYVE/PHD zinc finger | 125 | 181 | IPR011011 | - | |
| Glsi04g2169 | 241 | PANTHER | PHD FINGER PROTEIN | 135 | 208 | - | - | |
| Glsi04g2169 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 198 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi04g2169 | Glsi-ChrGlsi04 | 73590518 | 73598694 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi04g2169 | 136 | 187 | PHD Transcription Factor Family | AT2G36720 | 48.077 | 3.00e-13 | 67.0 |
Transcription factors information