Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2164 ATGATGAATTATATTGGAAACTATTGTGAAATAAGTAACTTAATCCTACTGATTTTCTGGAAATTTAGCTTTTTCAATCTAAATAAGGCCAGTCATGGTGGTGGTTTTGTGAAGAAGATGAAAATGGAGCAGATGGAGAAGACAAAGAAGAAGGTGAAGGTGAATGAGATATCCAATTTGCTATTGGGTATATTTGGTACCCGATATCCAATTCTTAGTACCTGGTATCAATTGTCCAAATTCCAATATCTTATTCTTTCAGGAGCAAGGTGGAATCAAAACCGGCAAAGCACAATTCAAAGAAGTGATATCAGTTCCAGTGGCAAGAATATTATTTACCAAGTCAAAAAAATGTCGAGGGTATGTGTGAAGAATCTACCAAAATATGTCACAGAGGATCGACTGCGCGAATTCTTTTCAGAGAAAGGAGAAATAACGGATGTAAAGCTTATGCGTACCAAAGATGGTAAGAGCCGGCAGTTTGCTTTTATTGGGTTCCGTACAGAGCATGAAGCCGAAGAAACTATAAAATATTTTAATAGATCTTACCTTGACACCTGTCGAATTACTTGTGAGGTGGCAAGAAAAGTTGGCGACCCAAATATTCCTCGTCCGTGGAGTCGATATTCGCTAAAGAAAGAGGAGAAAGTGAACCAAGATGGGAAAAAACATGCTGAAAGTAAAGGTGTTACTTGGGTGAAAGAAGGTGGAGAGAATTTGAAGGGCAGCGCTGACATTGATGATCCACAACTTCAAGAATTTCTTCAGGTCATGCAGCCTCGGGCTAAGTCTAAACTGTGGGAAAATGATATGTTATTAGCATCAAACAATGTTAGTGAGAAGCAAGAAATAGATGAAAATGGAAGCAAAGATATATCAGTTCCAATTCATGCTGAGTTAGTTCAAAGGGGATCACTTGAGGATGGGTCCGCAGACAATCATGAATCCAAAGAATCAAATGATCTTGTCCATGATGATATCATCTCAGATATGGAGTATTTCAAGAGTAGAGTGACAAAGAAGTGGTCAGATTCTGAAAGCAGTGATGATGATGATGATGATGATGATGATGATGAAGATGTCAATAATGCTTCTGTGAGCAGTGATGATGACGACAAAGACAATGATTGTCATGGTAATGAAGGTGAAGAAAAATGTGATAATATATCTTCAAAAGGAAGTGGAAGAAGTCGTGCTCAAAACTTAGGCTCAGAGGGCAAAGAAGATATCTGTCGTGAGGGTGATGACCATGAAAAGGCTGAAATGAAGGAACCTTCTGGTTATTCTAATGATAAAGTACCTGAGCAAGGGGGTCTGCCATCATGTTTAGAAGATGAGAAAGGAGCTTTTGAGTCCTGTCGACTGTTTGTCCGTAATCTGCCTTATACAGCCACTGAGGAGGAGCTGGAAGAACACTTCAGCAAGTTTGGCAGTGTCTCCCAAGTTCATCTAGTTGTTGATAAAGATACAAAACGGTCCAAAGGAATAGCATATATTCTATATACACTTGCAGAATTTGCAGCTAGGGCACTACAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCGATACAGAGACCTTCAAGCAACAAGGAGAACAATTCTTCCATGGACCAAAGCTCAAAAACTTTGAAGCTGCGTAGAGAAGAAGAGAGGAAAGCAGCTGAAGCTTCTGGAGATACCAGAGCGTGGAATAGTCTGTTTATGCGCTCTGATACAGTTGTTGAAAACATTGCTCGGAAATATGGTGTAAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCCGTACGTATTGCTCTGGGAGAAACTCAAGTGATTGCAGAGACAAAAAAGGCCCTTACAAATGCTGGAGTGAATGTAGAGTCTTTGGAGGAATTTGCCTTTGGGAAAAAAGATGATGGAGTGAAAAGAAGCAACCATGTGTTGTTAGTGAAGAACTTGCCATATGGTTCTTCAGAAAATGAACTGGCAAAGATGTTTGGGAAATTTGGTAGTTTGGACAAAATAATTCTCCCTCCAACAAAGACATTGGCCTTGGTTGTTTACCTTGAACCAGCTGAAGCTAGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAAGATGCTCCGTTGTACTTGGAGTGGGCTCCTTCCAATGTTCTTAGCCAAAGTTCAACATCTAAGAATAATGAAATGAGTGGTGCAATTGGTGAAAATGATGCCAAGCGGCTGATATTGGAGCAACATCTGGAAGGAATATCAGATGTGGACATTGATCCTGACAGAGTAGAGGCACGGTCCCTGTTTGTCAAGAACCTCAATTTTAAGACATCAGATGAGAGTTTGAAGAAACATTTTAGTGAACATATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAACGGGAAACAGGTTTCTATGGGATTTGGATTTATTGAGTTTGACTCTATGGTGACTGCTACAAATGCTTGCAGAGATTTACAGGGAACTGTTTTGGATGGCCACGCACTTATTTTACAACTTTGTCATGCCAAGAAGGACGGACAAATGCTGAAAACAGTTGAGAAGGACAAAAGTTCAACAAAATTACTTGTAAGAAATGTAGCTTTCGAGGCGACAGAGAAGGAATTGAGACAGTTGTTCAGCCCATTTGGCCAGATTAAGAGCTTAAGGTTGCCAATGAAGTTTGGAAGTCATAGAGGCTTTGCTTTTGTGGAGTATGTTACACAGCAGGAGGCACAAAATGCAATTAAAGCACTTTCAAGCACCCACTTGTATGGCAGGCATCTGGTGATAGAGAGAGCAAAGGAAGGTGAGAGTTTGGAAGAACTACGGGCTCGAACAGCTGCTCAATTTAGTGATGAGCAAAATGGATTTCAAAATCCAACCAAGTTATCCAAGAAAAGGAAGCACTTGGCCATCTTGGATGAAGGAAAGATGAAGTTTGAAAGAATTGCTGATTAG 2988 0.3999 MMNYIGNYCEISNLILLIFWKFSFFNLNKASHGGGFVKKMKMEQMEKTKKKVKVNEISNLLLGIFGTRYPILSTWYQLSKFQYLILSGARWNQNRQSTIQRSDISSSGKNIIYQVKKMSRVCVKNLPKYVTEDRLREFFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEHEAEETIKYFNRSYLDTCRITCEVARKVGDPNIPRPWSRYSLKKEEKVNQDGKKHAESKGVTWVKEGGENLKGSADIDDPQLQEFLQVMQPRAKSKLWENDMLLASNNVSEKQEIDENGSKDISVPIHAELVQRGSLEDGSADNHESKESNDLVHDDIISDMEYFKSRVTKKWSDSESSDDDDDDDDDDEDVNNASVSSDDDDKDNDCHGNEGEEKCDNISSKGSGRSRAQNLGSEGKEDICREGDDHEKAEMKEPSGYSNDKVPEQGGLPSCLEDEKGAFESCRLFVRNLPYTATEEELEEHFSKFGSVSQVHLVVDKDTKRSKGIAYILYTLAEFAARALQELDNSIFQGRLLHVMPAIQRPSSNKENNSSMDQSSKTLKLRREEERKAAEASGDTRAWNSLFMRSDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKKALTNAGVNVESLEEFAFGKKDDGVKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSQSSTSKNNEMSGAIGENDAKRLILEQHLEGISDVDIDPDRVEARSLFVKNLNFKTSDESLKKHFSEHMKEGRILSVKVKKHLKNGKQVSMGFGFIEFDSMVTATNACRDLQGTVLDGHALILQLCHAKKDGQMLKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYVTQQEAQNAIKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDEQNGFQNPTKLSKKRKHLAILDEGKMKFERIAD 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2164 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Glsi04g2164 995 MobiDBLite consensus disorder prediction 308 325 - -
Glsi04g2164 995 CDD RRM4_RBM19_RRM3_MRD1 649 720 - -
Glsi04g2164 995 MobiDBLite consensus disorder prediction 532 563 - -
Glsi04g2164 995 SUPERFAMILY RNA-binding domain, RBD 646 736 IPR035979 GO:0003676
Glsi04g2164 995 SUPERFAMILY RNA-binding domain, RBD 118 204 IPR035979 GO:0003676
Glsi04g2164 995 SMART rrm1_1 120 192 IPR000504 GO:0003723
Glsi04g2164 995 SMART rrm1_1 650 717 IPR000504 GO:0003723
Glsi04g2164 995 SMART rrm1_1 770 848 IPR000504 GO:0003723
Glsi04g2164 995 SMART rrm1_1 870 941 IPR000504 GO:0003723
Glsi04g2164 995 SMART rrm1_1 454 527 IPR000504 GO:0003723
Glsi04g2164 995 Gene3D - 766 858 IPR012677 -
Glsi04g2164 995 MobiDBLite consensus disorder prediction 347 365 - -
Glsi04g2164 995 CDD RRM6_RBM19_RRM5_MRD1 869 943 - -
Glsi04g2164 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Glsi04g2164 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 871 938 IPR000504 GO:0003723
Glsi04g2164 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 771 845 IPR000504 GO:0003723
Glsi04g2164 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 651 713 IPR000504 GO:0003723
Glsi04g2164 995 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 455 525 IPR000504 GO:0003723
Glsi04g2164 995 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 454 553 - -
Glsi04g2164 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 869 945 IPR000504 GO:0003723
Glsi04g2164 995 Gene3D - 641 743 IPR012677 -
Glsi04g2164 995 Gene3D - 860 969 IPR012677 -
Glsi04g2164 995 MobiDBLite consensus disorder prediction 402 428 - -
Glsi04g2164 995 SUPERFAMILY RNA-binding domain, RBD 865 947 IPR035979 GO:0003676
Glsi04g2164 995 MobiDBLite consensus disorder prediction 338 443 - -
Glsi04g2164 995 SUPERFAMILY RNA-binding domain, RBD 757 857 IPR035979 GO:0003676
Glsi04g2164 995 SMART rrm2_1 770 848 IPR003954 GO:0003676
Glsi04g2164 995 SMART rrm2_1 870 941 IPR003954 GO:0003676
Glsi04g2164 995 SMART rrm2_1 120 192 IPR003954 GO:0003676
Glsi04g2164 995 SMART rrm2_1 454 527 IPR003954 GO:0003676
Glsi04g2164 995 FunFam RNA-binding motif protein 19 118 217 - -
Glsi04g2164 995 FunFam Multiple RNA-binding domain-containing protein 1 863 969 - -
Glsi04g2164 995 CDD RRM1_MRD1 119 194 - -
Glsi04g2164 995 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 750 861 - -
Glsi04g2164 995 MobiDBLite consensus disorder prediction 366 391 - -
Glsi04g2164 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 649 721 IPR000504 GO:0003723
Glsi04g2164 995 FunFam Multiple RNA-binding domain-containing protein 1 640 742 - -
Glsi04g2164 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 769 852 IPR000504 GO:0003723
Glsi04g2164 995 MobiDBLite consensus disorder prediction 304 325 - -
Glsi04g2164 995 SUPERFAMILY RNA-binding domain, RBD 450 544 IPR035979 GO:0003676
Glsi04g2164 995 Gene3D - 90 239 IPR012677 -
Glsi04g2164 995 Gene3D - 417 568 IPR012677 -
Glsi04g2164 995 CDD RRM3_RBM19_RRM2_MRD1 454 527 - -
Glsi04g2164 995 MobiDBLite consensus disorder prediction 548 563 - -
Glsi04g2164 995 MobiDBLite consensus disorder prediction 532 547 - -
Glsi04g2164 995 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 453 531 IPR000504 GO:0003723
Glsi04g2164 995 CDD RRM5_RBM19_like 770 850 IPR034423 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2164 Glsi-ChrGlsi04 73515262 73531559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2164 762 961 Eukaryotic Initiation Factors Gene Family AT1G49760 30.516 1.92e-13 72.8