Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2141 ATGAAACTGCTTCCTGCGCGCCTGATGAAGTCCCTGTCAGTTTCTTCTTTACCAGCTACTCCCACCCTTCAAGAGATAGCTTACAGTCAACCCAAAGGTATTGCAAAGGTTGTACTGAAGAAGGGGAAGTCACAACTCTTTAAGGATGGGAACCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGAAGACCACCTCCTAGGACTGGAGATATTGTGCTGGTGGCAGATGGGACTGAGAAACCAATAGGATGGGGCTTGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTCATGCAGTTTGAAGATGAAACTACTAGGGATTCATCCTGTGCTCTGAACATTGAGAAATTGCTTGAGACAAGAATAGGTGCTGCTGTTGAATTGCGTAGAAGGTTGGGTCTTCCTTCAGCCCATACAAATGCATATCGTCTAATTAATAGTGAGGGAGATAGATTATCAGGATTGATCATTGATATCTTTGGAGATGTAGCTGTTATAGCATCATCTGCTGCTTGGGTTGAGAAGTACAGGCCAGAGATAGAGGCATGCATTGCTAGAATCAATGATATCAATCACATAAATTGGCGACCATCTGTTGATATTTTAAAGGAAGAAGGCGTGGATGCATCAGATTTGAAGGAAATTCATTCTTCTACTTGTCCTGAAAGGTCAAAGATTATGGAAAATGGAATTTTATATGCAATTTCACTGAAGGGCCAGAAGACAGGATTTTATGCAGATCAACGTGAGAACCGCCATTTTATATCAAGAATTTCAGATGGTCAAAAGGTTCTTGATCTTTGCTGCTATAGTGGTGGTTTTGCTCTGAATGCAGTCCGTGGAGGTGCTGTTAATGTCACAGGCGTTGATACATCATTGCCAGCTTTGGAGCTTGCTAAAGAAAATGTTGTACTTAACAATATGGATCCTGAAAGAATATCATTTTTGAGAGAAGATGCAACTGTATTTATGAAGGGTGCTCTCTCAAGAAATGAGTCCTGGGATATTGTCATCATTGATCCTCCTAAACTGGCTCCAACAAAAAAGGTTCTGCATAATGCATCAGGCATGTACAGAAATTTGAACTCGTTAGCTATGCAACTAACAAAAAGAGGTGGTCTTCTTATGACTTGTTCATGTTCTGGAGCTGTGACCCAAAGTGGAATATTCTTGCGTATTCTTCAGGGTGCAGCATCCATGGCAGGGAGGAAAATCACCGTTCTAAGACAGGCTGGAGCAGCTTCTGATCATCCCATGGAGCCATCTTACCCAGAAGGTGCATACCTATCCAACATCTTGTTACGAGTATTATGA 1320 0.4189 MKLLPARLMKSLSVSSLPATPTLQEIAYSQPKGIAKVVLKKGKSQLFKDGNPMVYSGAVDRIIGRPPPRTGDIVLVADGTEKPIGWGLYNSVSMFCVRLMQFEDETTRDSSCALNIEKLLETRIGAAVELRRRLGLPSAHTNAYRLINSEGDRLSGLIIDIFGDVAVIASSAAWVEKYRPEIEACIARINDINHINWRPSVDILKEEGVDASDLKEIHSSTCPERSKIMENGILYAISLKGQKTGFYADQRENRHFISRISDGQKVLDLCCYSGGFALNAVRGGAVNVTGVDTSLPALELAKENVVLNNMDPERISFLREDATVFMKGALSRNESWDIVIIDPPKLAPTKKVLHNASGMYRNLNSLAMQLTKRGGLLMTCSCSGAVTQSGIFLRILQGAASMAGRKITVLRQAGAASDHPMEPSYPEGAYLSNILLRVL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2141 439 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 22 438 - -
Glsi04g2141 439 Gene3D Vaccinia Virus protein VP39 226 439 IPR029063 -
Glsi04g2141 439 Gene3D PUA domain 34 105 IPR036974 GO:0003723
Glsi04g2141 439 Gene3D RNA methyltransferase domain (HRMD) like 116 219 - -
Glsi04g2141 439 Pfam PUA-like domain 37 101 IPR041532 GO:0003723
Glsi04g2141 439 SMART pua_5 35 129 IPR002478 GO:0003723
Glsi04g2141 439 Pfam S-adenosylmethionine-dependent methyltransferase 216 395 IPR019614 GO:0008168
Glsi04g2141 439 CDD AdoMet_MTases 265 380 - -
Glsi04g2141 439 CDD RlmI_M_like 119 208 - -
Glsi04g2141 439 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 434 IPR029063 -
Glsi04g2141 439 CDD PUA_RlmI 35 105 IPR041532 GO:0003723
Glsi04g2141 439 SUPERFAMILY PUA domain-like 36 105 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2141 Glsi-ChrGlsi04 73243924 73251618 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g2141 04 73243924 73251618 Glsi04g2141 04 73243924 73251618 ECH