Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2139 ATGGAAAGAATGTTCCCTCCAAAGAAGCCCTCAACTATGAATTCCCAAGACAGACCCATGTGTGTTCAAGGTGACTCGGGCCTCGTCCTCACCACAGATCCAAAGCCTCGCCTTCGCTGGACTGTCGAGCTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACACTTTACCACCTAAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAGCCCCACAAAGATTTCAATGATCACAGCTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTTCAACGAAACACGGCCTCCTCATCCGCCATGATTGGCCGGAACATGAATGAGATGCAAATGGAGGTGCAGAGAAGACTGCAAGAACAACTAGAGGTTCAGAAACACCTTCAGCTGAGGATTGAAGCACAAGGGAAATACATGAAGAGTATATTGGAAAAGGCTTATCAAACACTTGCTGGTGAAAACATGGCAGCTTCTGCCGCTAACTTAAAGGGAATTGGAGCTCATCATCAAGGCATTTCTGACATGGAAGGAATCGTGAAGGATTTTGGGTCCCCTCTTAATTTCCCTTCTTTTCAAGAACTTAACATTTATGGTGGTGATAATAATAATAATCACCATCTTGATCATGGGTTCATGCCAAATAATAATAACGAAAATTTGTATCTGGGGAAGAAGATTGGAAAGAGCCCTTTAATTTGGAATGAGGATTTAAGGCTTCATCAAGATTTGGGAAGTGCAGCCTCATCATGCCTTGATGATCCTTTCAAAGGAGAAGACCAGATTCAGAATATTGCACCACCAGTATCATCAATCGATCCCATATCAGAAATTTATGACACTAAACCTTTACTTCAAGGGGAAGAAAAGAAGTTTGACCCATCAGTCAAGCTTGAAAGGCCATCACCAAGAAGATCACCTCTTCAAGCAGAAAGGATAAGTATGAGCCCTATGATTAGAAGCTCACCCTTTGGGTGA 1041 0.4352 MERMFPPKKPSTMNSQDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSSIKDGMRASALELQRNTASSSAMIGRNMNEMQMEVQRRLQEQLEVQKHLQLRIEAQGKYMKSILEKAYQTLAGENMAASAANLKGIGAHHQGISDMEGIVKDFGSPLNFPSFQELNIYGGDNNNNHHLDHGFMPNNNNENLYLGKKIGKSPLIWNEDLRLHQDLGSAASSCLDDPFKGEDQIQNIAPPVSSIDPISEIYDTKPLLQGEEKKFDPSVKLERPSPRRSPLQAERISMSPMIRSSPFG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2139 346 MobiDBLite consensus disorder prediction 1 20 - -
Glsi04g2139 346 Pfam MYB-CC type transfactor, LHEQLE motif 132 171 IPR025756 -
Glsi04g2139 346 MobiDBLite consensus disorder prediction 304 327 - -
Glsi04g2139 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Glsi04g2139 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 189 IPR044848 GO:0003700
Glsi04g2139 346 FunFam Myb family transcription factor 34 92 - -
Glsi04g2139 346 Gene3D - 34 92 - -
Glsi04g2139 346 MobiDBLite consensus disorder prediction 304 346 - -
Glsi04g2139 346 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Glsi04g2139 346 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Glsi04g2139 346 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2139 Glsi-ChrGlsi04 73222635 73224757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2139 4 346 G2-like Transcription Factor Family AT1G79430 58.021 1.08e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi04g2139 Myb_DNA-binding 1.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g2139 04 73222635 73224757 Glsi04g2139 04 73222635 73224757 ECH