Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2137 ATGGGCCATCATTGCTGCAGCAAACAAAAGATCAAAAGAGGATTGTGGTCTCCTGAAGAAGATGAGAAGCTTATCAGACATATCACGACTCATGGTCATAAAAGTTGGAGTTCTGTCCCAAAGCTTGCAGGCACACTCTTCACTCACTCTGTCTCTGTCTCTGTGTATTTGTGTCTTTCTCTTCTAAATATAAAAAGATGTTATTGTGGTGGGTTATGCGCAGGCTTGCAGAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGACCAGACCTCAAGAGGGGCTCCTTCACTGCTGAAGAAGAGCAGACCATCATTGACGTTCATAGAATTCTGGGAAACAGATGGGCCCAAATAGCCAAGCACCTCCCAGGAAGAACAGACAACGAGGTCAAGAATTTCTGGAATTCATACATTAAGAAGAAGCTCATGTCTCAAGGGTTAAACCCACAAACTCACACTCTCCTCTCTTCTTCTCATAGGAAAGCCTCTGCATATAATATCATAGTCCCAGACATCCAGCAAAATTCCAATTCTAATTTCATTCTGAACTCACAGACACTAACGGAAACTAGTAGACCTTTTTCTTCAGTGCCCGAAGCTCAACCGGATATTGGTCAAACCACCTTCATTCTTGACTATAATAATCGTCACTCTCATTATAAACCATCAATTGGAAACACACCCAACATTTGTTCCTCCTACACAAACCCATCTGCGATTGGATTGTCTGACATTAATGAGAATAACAGATGGGTTTCTGGTGCTGATGCCGACAATTTTAGAGCTCAAACATTGGAAGGATCAGTACAAGCACAAGTACAGCAAGAAAAGGCCAAGACTTGTGAGAAGGGAATTCTTGAAGGCACAGAAGCCAAGGGCAGTCCTGAATCAATGAATGCTTCTCTTGAGGGCTTAAACTTTGATTTTGGGTTGTTGGAGGGTGTTCTTACCTCTGAGTTTATGTCTCATGGTCTCAGCCTAATGGATGACCTTGCATGGAACTTTTAG 1020 0.4245 MGHHCCSKQKIKRGLWSPEEDEKLIRHITTHGHKSWSSVPKLAGTLFTHSVSVSVYLCLSLLNIKRCYCGGLCAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQTIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSYIKKKLMSQGLNPQTHTLLSSSHRKASAYNIIVPDIQQNSNSNFILNSQTLTETSRPFSSVPEAQPDIGQTTFILDYNNRHSHYKPSIGNTPNICSSYTNPSAIGLSDINENNRWVSGADADNFRAQTLEGSVQAQVQQEKAKTCEKGILEGTEAKGSPESMNASLEGLNFDFGLLEGVLTSEFMSHGLSLMDDLAWNF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2137 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 45 IPR017930 -
Glsi04g2137 339 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Glsi04g2137 339 Pfam Myb-like DNA-binding domain 97 141 IPR001005 -
Glsi04g2137 339 Pfam Myb-like DNA-binding domain 13 91 IPR001005 -
Glsi04g2137 339 CDD SANT 16 91 IPR001005 -
Glsi04g2137 339 Gene3D - 98 171 - -
Glsi04g2137 339 CDD SANT 99 142 IPR001005 -
Glsi04g2137 339 SUPERFAMILY Homeodomain-like 7 44 IPR009057 -
Glsi04g2137 339 Gene3D - 10 97 - -
Glsi04g2137 339 PANTHER MYB DOMAIN PROTEIN 55 1 258 - -
Glsi04g2137 339 FunFam Myb transcription factor 99 146 - -
Glsi04g2137 339 SMART sant 96 144 IPR001005 -
Glsi04g2137 339 SMART sant 12 93 IPR001005 -
Glsi04g2137 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Glsi04g2137 339 SUPERFAMILY Homeodomain-like 78 150 IPR009057 -
Glsi04g2137 339 ProSiteProfiles Myb-like domain profile. 8 91 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2137 Glsi-ChrGlsi04 73197000 73198413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2137 1 164 MYB Transcription Factor Family AT3G12720 68.293 6.20e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g2137 Myb_DNA-binding 6e-10 CL0123