Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2135 ATGGCTCCAATGAGTCTTCCACCTGGTTTTAGGTTCCATCCAACAGATGAAGAACTTGTTGCTTACTACTTAGAAAGAAAGATAACAGGTCGCTGCATAGAGCTTGAGATTATCCCAGAAGTTGATTTATACAAATGTGAACCATGGGATTTGCCAGATAAGTCATTCTTGCCAAGCAAAGACATGGAGTGGTATTTCTACAGCCCAAGAGACAGAAAGTATCCAAATGGATCAAGAACTAACAGGGCAACAAGAGCTGGTTACTGGAAAGCTACTGGGAAAGATAGGCCAGTGAATTCTCAAAAGAGACCGATTGGCATGAAGAAGACGCTGGTTTATTACAGAGGCAGAGCCCCTCATGGCATTAGAACTTACTGGGTTATGCATGAGTATCGCCTCATTGACTCTGAGCCTGGAACTTCTTTCTCTTCTTTAAAGGATTCTTATTCATTGTGTCGCGTTTTCAAGAAGACAACTCAAATCTCTGAACCTAAAAAAGAAGATCAAACTGGAGATGCAAAGAAGGAATCTATGGAAGAAAAAGCAGTAGTAGGGGAAGAAATGGAAACCCTAAATGATCAGAAAGTTCTTATAAATCATGACCAATCTAACTTTCCTAATTGTGATCTTGCTTCTTCTTCTGATCTCACTCAAGGAACACCCGCTGAAACTGGCATAGTAGATGATTTTCAAGCACAATTTGCTTATTGTGACGAAGCAAATAGCGCAGCTAACTCCTATTCTCTTGGCATGGATTACTCACCATATATGTTTCAGGATATAGAGCTACCTATCAATGGAGGCATGCACTATGATCAGCTTCCACCATACTCACCCTTGGAGCTGGAAGATTTTCCTCAAATAAATTTTGCAGAGGCAAAGCCAATGAAGCCTGAAATAACTGGTCAAAATTGCATGTTATATGACAAATACAGGGACTGTATGAATGGAACACTAGAAGAGATCATCTCTTTGTGTTCCTCTCAAGATATATAA 996 0.4006 MAPMSLPPGFRFHPTDEELVAYYLERKITGRCIELEIIPEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRPVNSQKRPIGMKKTLVYYRGRAPHGIRTYWVMHEYRLIDSEPGTSFSSLKDSYSLCRVFKKTTQISEPKKEDQTGDAKKESMEEKAVVGEEMETLNDQKVLINHDQSNFPNCDLASSSDLTQGTPAETGIVDDFQAQFAYCDEANSAANSYSLGMDYSPYMFQDIELPINGGMHYDQLPPYSPLELEDFPQINFAEAKPMKPEITGQNCMLYDKYRDCMNGTLEEIISLCSSQDI 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2135 331 FunFam Nac domain-containing protein 86 15 160 - -
Glsi04g2135 331 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Glsi04g2135 331 Gene3D NAC domain 15 162 IPR036093 GO:0003677|GO:0006355
Glsi04g2135 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 199 - -
Glsi04g2135 331 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Glsi04g2135 331 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2135 Glsi-ChrGlsi04 73148347 73151738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2135 1 324 NAC Transcription Factor Family AT1G54330 54.630 6.96e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi04g2135 NAM 4.4e-39 No_clan