Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2125 ATGCCAGCATTGCCCTCAGCGCGGTTGGTCCTGCTTGTTGGAGAGTCATTGCCCATGCCAAGGTTCTTGCCCACTTTTAGGACAGCATGGTTGCACAGCAGTGTCCATTCTTTGAGTCAGGTAGGGCCTCAACATGCTTCCCTTAGTCCTTTAAGCCTTGGTTCCAACGGTGAAATTGAAAACAGAAGCAAAGACAAAGTAAATAAGTCGAAGCAATTGGGTTCCTCCTCTGTAGTCTCAAAGAGCAAAGCAAAGGCCTTTGGTATTAATGAAATTAAGGCAGTTGGAGCCACAAAGAGGCAACAAATAGAGTCTGCTCCATTTGCTGCAAAGTCTTTTTCTGAACTTGGCCTCCCTCATCTGTTGATTGAGAGGTTAGAAAATGAAGGTTTCACAGTTCCAACTGAAGTTCAGTCTGCAGCAATTCCTACAATTTTGAAGAATCATGATGTCATAATTCAATCTTACACAGGTTCAGGGAAAACACTGACTTATCTCCTTCCCATACTATCTGATGTTGGCCCACTGAAGAACACAGCTTCTGAAGGTAACAGTGATGGTGAACCTGGGAGAAAAATGGGAATAGAAGCAGTAATTGTTGCTCCCTCTAGGGAGCTGGGTATGCAAATAGTGAGGGAGTTTGAGAAGATACTTGGACCTGCTAATAAAAAAGTGGTTCAACAGCTTGTGGGAGGTGCAAACAGATCCAGGCAAGAAGAAGCTCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCAGGTAGAATATCAGAGCTCAGTGCCACTGGGAAACTGCACACCCATGGCTGTCGCTATTTAGTCCTAGATGAAGTTGATGAACTCCTGTCTTTTAACTTCCGGGAGGACATGCACCGGATACAGGAACACGTGGGGAGGAGATCAGGTGTAGACTCTCGTGGACCAAAAGGCGCAATTCCTAGACGGGCTGAGCGTCAGATAATTATGGTGTCTGCAACTGTCCCCTTTTCTGTTGTAAGGGCAGCCCAGAGTTGGGGGCGTGATCCACTTCTTGTCCAAGCCAATAAAGTTGGTCTGCTTGAAAATTTTTCTCCTTCCAAACCTTTCAATTTGTCCGGCTCTATGCCTAGCTCAAATCCTAACTCGACTATGCTATCTCAGGCAACAGTAGAGAGTCTACCTCCTGCATTGAAACATTATTATTGTGTCACAAAGTTACAGCACAAAGTTGATACTTTGAGACGGTGTATTCATGCACTAGATGCCAAATATGTCATAGCTTTCATGAACCATATTAAGCAACTTAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGAAAGCTGCAGAGTTACATGGGGATCTTGGAAAGCTTGCTAGGTCAACAACTCTGAAAAAATTCAAAAATGGTGAGGTGAGAGTGCTGGTGACAAATGAATTATCGGCAAGAGGTTTGGATGTGGCAGAGTGTGATCTTGTGGTTAATCTGGACTTACCCACAGACTCTGTTCACTATGCTCACCGAGCTGGGAGGACAGGTCGGCTTGGTAGGAATGGTACAGTGCTTTCGATGTGTGAAGAGCCAGAAGTGTTTGTTGTGAAGAAACTGCAAAAGCAGCTTGGGATGCCAATAGTGTGCTGTGAGTTTACAGAGGGAAAGCTGCTTGTAATTGAAGAAGAGAAAAGGCTAAGCACTGTGAGATGA 1689 0.45 MPALPSARLVLLVGESLPMPRFLPTFRTAWLHSSVHSLSQVGPQHASLSPLSLGSNGEIENRSKDKVNKSKQLGSSSVVSKSKAKAFGINEIKAVGATKRQQIESAPFAAKSFSELGLPHLLIERLENEGFTVPTEVQSAAIPTILKNHDVIIQSYTGSGKTLTYLLPILSDVGPLKNTASEGNSDGEPGRKMGIEAVIVAPSRELGMQIVREFEKILGPANKKVVQQLVGGANRSRQEEALKKNKPAIVVGTPGRISELSATGKLHTHGCRYLVLDEVDELLSFNFREDMHRIQEHVGRRSGVDSRGPKGAIPRRAERQIIMVSATVPFSVVRAAQSWGRDPLLVQANKVGLLENFSPSKPFNLSGSMPSSNPNSTMLSQATVESLPPALKHYYCVTKLQHKVDTLRRCIHALDAKYVIAFMNHIKQLKDVVFKLEARGMKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSVHYAHRAGRTGRLGRNGTVLSMCEEPEVFVVKKLQKQLGMPIVCCEFTEGKLLVIEEEKRLSTVR 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2125 562 CDD SF2_C_DEAD 391 520 - -
Glsi04g2125 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 78 550 - -
Glsi04g2125 562 Pfam Helicase conserved C-terminal domain 405 511 IPR001650 -
Glsi04g2125 562 Gene3D - 75 349 IPR027417 -
Glsi04g2125 562 SMART helicmild6 430 511 IPR001650 -
Glsi04g2125 562 SMART ultradead3 130 357 IPR014001 -
Glsi04g2125 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 406 550 IPR001650 -
Glsi04g2125 562 CDD DEADc 122 347 - -
Glsi04g2125 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Glsi04g2125 562 Gene3D - 388 546 IPR027417 -
Glsi04g2125 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 531 IPR027417 -
Glsi04g2125 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 346 IPR014001 -
Glsi04g2125 562 Pfam DEAD/DEAH box helicase 135 332 IPR011545 GO:0003676|GO:0005524
Glsi04g2125 562 MobiDBLite consensus disorder prediction 46 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2125 Glsi-ChrGlsi04 72976871 72978559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2125 112 539 Eukaryotic Initiation Factors Gene Family AT3G19760 24.299 1.47e-40 150