Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2124 ATGGCCGCCACCACCACCACAAATGCCGCTGCTCCTCCACGCCAGCTATCCCAGAAGGAGGCTGACATCCAGATGATGTTGGCCGCGGAGGTCCACCTTGGAACGAAAAATTGCAACTTTCAAATGGAGCGCTACGTCTTCAAGCGCCGCAACGATGGTATCTACATCATTAATCTCGGGAAAACATGGGAGAAGCTTCAGCTTGCTGCCAGGGTTATTGTTGCCATTGAGAACCCTCAAGATATTATTGTTCAATCTGCCAGGCCTTATGGTCAAAGAGCTGTTCTTAAGTTTGCTCAATACACTGGTGTCCATGCACTTGCTGGAAGGCACACTCCAGGAACGTTCACTAATCAGCTCCAGACATCTTATAGTGAGCCTCGCCTTCTCATTCTAACTGATCCAAGAACAGATCATCAGCCAATCAAGGAAGGTGCTCTTGGAAATATACCAATTATTGCCTTTTGCGACACTGATTCTCCCATGCGGTATGTTGATATTGGGATTCCAGCCAATAACAAGGGGAAGCATAGCATTGGTTGCCTCTTTTGGCTATTGGCAAGGATGGTACTGCAGATGCGGGCTACTATTCGACCAGGGCATAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAGGAGGCCAAGCAACTGGAGGAAGATGAGGCACCTCCTGCCCAAGATTATGCTGCTGCAGATTTCGGCGCTGCCGGTATTGGAGCCATTGCTGCTGATGGCCAGTGGCCTTCTGCAATTGAACAATCCTGGACTGATGCTGTGCCACAACCAATTCCAGCCGTTCCTGGCGTCAACTGGACCCCAGAAGCTGGAGAGTGGGGTGCATCTGTTCCAGCTCCACAAGTTCCTGCTCCCGGAATTGACAGTGTTCCTGCTCCTGGAATTGACGGTGTTCCTGCTCCTGGAATTGACAGTGTTCCTGCTACTGGCTGGGACTAA 966 0.5021 MAATTTTNAAAPPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGVHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEGALGNIPIIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRATIRPGHKWDVMVDLFFYREPEEAKQLEEDEAPPAQDYAAADFGAAGIGAIAADGQWPSAIEQSWTDAVPQPIPAVPGVNWTPEAGEWGASVPAPQVPAPGIDSVPAPGIDGVPAPGIDSVPATGWD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2124 321 PANTHER 40S RIBOSOMAL PROTEIN SA 13 290 IPR005707 GO:0003735|GO:0006412|GO:0015935
Glsi04g2124 321 Hamap 40S ribosomal protein SA [rps-0]. 10 254 IPR027498 GO:0003735|GO:0006412|GO:0015935
Glsi04g2124 321 Gene3D - 22 227 - -
Glsi04g2124 321 CDD RPS2 26 192 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 SUPERFAMILY Ribosomal protein S2 18 208 IPR023591 -
Glsi04g2124 321 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 PRINTS Ribosomal protein S2 signature 144 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 PRINTS Ribosomal protein S2 signature 165 179 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 FunFam 40S ribosomal protein SA 22 228 - -
Glsi04g2124 321 Pfam Ribosomal protein S2 26 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 Pfam Ribosomal protein S2 124 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 NCBIfam 30S ribosomal protein S2 18 214 IPR005707 GO:0003735|GO:0006412|GO:0015935
Glsi04g2124 321 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 ProSitePatterns Ribosomal protein S2 signature 2. 127 151 IPR018130 GO:0003735|GO:0005840|GO:0006412
Glsi04g2124 321 MobiDBLite consensus disorder prediction 275 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2124 Glsi-ChrGlsi04 72966940 72969240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2124 10 288 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.445 2.47e-153 429