Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2121 ATGTATGGGTGTAATTGTGGCATATGGAATGAGGAATCAAATTTTGCTTTAGGATATAGATTTAGTAGCCATTGCAATGCAAAGATCGCAGGAGAATGCAACAAAGGGAAGGCTTTGTTTCGTGGGAGTAAAAGCATCGTTGATGGGGTGTTATTGTGCTGCCCACGGATGGCGTCAAAACCTGTCAAGAGGCCTGACTTACCTGAGATGAACCACAATTCGCCAGAGGCTGATCAGATTGCTCAGAGTTATGCCAATTCAGCAGCATCTAGTTCACCAGAACATCTCAAAAATTTGAATCAAGCTGCAAAAGGTTCTTCTAAATCTGACACAAAGTTAACTAATAATCAGGCCTCTGAACCTCAGAAACCAGAACTACGCAGCATGAATGTTTCTGATCCCCCAACTACAACGGGAATTGCATGGGGATTGCCTTCACATTCAAAGAGCACCAATCATGGCCATGGAAGTGGAAACAGCTCTCGTAGTGACAGTTTAGAAAGCACCAGTGCACCCTCCATTAAGCCACATACCGGTGGTGATGTAAGGTGGGAAGCAATTCACACGGTTTCCAAGGGAGCCTCTCTTGACCTTAGCCATTTTCGGCTTCTCAAGCGCCTTGGCTATGGAGACATTGGAAGTGTATATCTTGTGGAACTTAAAAGAACTGGGACCTACTTTGCCATGAAAGTGATGGACAAGGCATCTCTTGTAAGCAGAAATAAGCTACTGCGAGCACAGACAGAGAAGGAGATTCTTGGACTTCTTGACCACCCATTCTTACCCACTTTGTACTCTTACTTTGAAACTGATAAGTTCTACTGCTTGGTCATGGAGTTCTGCAGTGGAGGTAATCTTCATTCTCTTCGACAAAAGCAACCCAACAAGCATTTTACAGAAGAAGCTGCACGGTTCTATGCTTCAGAGATATTGTTAGCTCTCGAGTACCTGCACATGCTAGGCATAGTGTACAGAGACTTGAAGCCAGAGAATGTCTTAGTCAGAGATGAAGGCCATATCATGCTTTCAGATTTTGATCTATCCCTTCGCTGCTCTGTCAATCCTACACTCGTCAAGTCTTCATCTGCCCACGTAAGCAACAGCAGCTGCAGCAATGGTAGTAGTAGTGGTTCTGGAGGCATTTTGGATGATCAGCATGCAGTACAGAGTTGCATACAGCCATCAATTTTCTTCCCCCGCATTTTACCTTCCAAAAAGAACCGAAAATCAAAGTCTGATTTTGGCCTCTTGGGTGGAGGGGGTGCCCTTCCTGAACTAATGGCAGAGCCTACAAATGTGAGATCAATGTCCTTTGTAGGGACACATGAATATCTTGCACCAGAAATCATCCGAGGAGAGGGTCACGGTAGTGCAGTAGATTGGTGGACATTTGGGATCTTCTTGTATGAACTTTTGCATGGGACAACACCCTTTAAGGGTGCAGGAAACAGAGCCACACTCTTTAATGTTGTAGGGCAGCCATTGAGGTTTCCAGAAACTCCCCAGGTCAGCTCTGCAGCTCGAGATCTTATCAGAGGATTGTTGGTGAAAGAACCTCCAAAGAGAATTGCATATAAAAGGGGTGCTACAGAAATAAAACAACACCCATTTTTTGAGGGAGTGAACTGGGCTCTAGTTAGAAGTGCCATGCCTCCCCATATACCAGAACCTGTAGATTTTTCCCAGTATGCTAGTAAAGGAACAGCGGCCCCAACAGACAGGAAGATGACAGATGTTGCAAAAGATAAAAACAGCCAGAATAGTCCCCCTCATTCTTCTTACATAGAGTTTGAGTATTTTTAA 1803 0.4454 MYGCNCGIWNEESNFALGYRFSSHCNAKIAGECNKGKALFRGSKSIVDGVLLCCPRMASKPVKRPDLPEMNHNSPEADQIAQSYANSAASSSPEHLKNLNQAAKGSSKSDTKLTNNQASEPQKPELRSMNVSDPPTTTGIAWGLPSHSKSTNHGHGSGNSSRSDSLESTSAPSIKPHTGGDVRWEAIHTVSKGASLDLSHFRLLKRLGYGDIGSVYLVELKRTGTYFAMKVMDKASLVSRNKLLRAQTEKEILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKHFTEEAARFYASEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPTLVKSSSAHVSNSSCSNGSSSGSGGILDDQHAVQSCIQPSIFFPRILPSKKNRKSKSDFGLLGGGGALPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGNRATLFNVVGQPLRFPETPQVSSAARDLIRGLLVKEPPKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHIPEPVDFSQYASKGTAAPTDRKMTDVAKDKNSQNSPPHSSYIEFEYF 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2121 600 Gene3D Phosphorylase Kinase; domain 1 199 284 - -
Glsi04g2121 600 FunFam Serine/threonine-protein kinase AGC1-7 431 556 - -
Glsi04g2121 600 PANTHER FLIPPASE KINASE 1-RELATED 91 564 - -
Glsi04g2121 600 FunFam serine/threonine-protein kinase D6PK-like 285 352 - -
Glsi04g2121 600 FunFam Serine/threonine-protein kinase D6PK-like 199 284 - -
Glsi04g2121 600 Gene3D Transferase(Phosphotransferase) domain 1 285 355 - -
Glsi04g2121 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 322 334 IPR008271 GO:0004672|GO:0006468
Glsi04g2121 600 SUPERFAMILY Protein kinase-like (PK-like) 198 574 IPR011009 -
Glsi04g2121 600 MobiDBLite consensus disorder prediction 100 175 - -
Glsi04g2121 600 ProSiteProfiles Protein kinase domain profile. 201 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2121 600 MobiDBLite consensus disorder prediction 566 592 - -
Glsi04g2121 600 Pfam Protein kinase domain 435 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2121 600 Pfam Protein kinase domain 202 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2121 600 SMART serkin_6 201 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2121 600 Gene3D Transferase(Phosphotransferase) domain 1 433 556 - -
Glsi04g2121 600 CDD STKc_phototropin_like 199 559 - -
Glsi04g2121 600 MobiDBLite consensus disorder prediction 100 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2121 Glsi-ChrGlsi04 72924515 72930041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2121 166 600 AGC Kinase Gene Family AT1G79250 74.172 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Glsi04g2121 Pkinase 2.2e-37 CL0016