Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2117 ATGGCAAATCAACTCTATCTCTACGGCTATAGCCCTACAAACGGAGGAGCATCACCGCCTTCTCCAGTTGCGGCCGCCGCTACAGCCACTGCCGCCACCCCTCCTCTCTACCTGCCCTCCTCCCGATACCTTCCCCCCGATATGTATTTGTCCCACCGCAAAGAAGCCGCTCTCCGGTATCACTCTTACGCCTCTTCGGATGTTGACATTGGCCCACCTGGTGTTTCTACCAGAATCTCTGGTACTGCTGTAGGACCAGCCTCTTCCACCACTACCCATTTGCTGTCTCAATCTTCTTGGCCTGCTGCCATTGCTGCTGCTGCCGCTGCTGCAAATGTTGGGTCGGCCACACTTGATCCAATTATTAACAACATGAAACGCTCTTCTGATGCGCTCTACCATCCAACTGTTTTGAGTACCCATAACACATTTGGGCAAAGTGAAGCTTGGTATTCTACGAACTCATTAACAAAGCGCCCTAGATATGAGAGTGCAAGCCATTTGCCTATATATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTACCAAATGCTGTTACAAGTGAGACTCTTCCTGAGAGACCAGGAGAACCAGATTGTCCATACTTTCTCAAAACTCAGAGATGCAAGTTTGGTTCTAATTGCAAGTTTAATCATCCAAAGGATTTCTTTGAAAATGCTGATGTTTCTGCATTACCTGAGAGGCCATCTGAGGCCCCGTGTGCGTTCTACATGAAAACTGGAAGATGTAAATTTGGTGTTAGCTGCAAATTTCATCACCCAAAAGATATGGAGATTCAGTTGTCTGAAGAACAGAATGATGCTGTTGAGCAGACCCAATTTACTACTAAGACAGAGAGGGCAACAGGAGATACACAACCAATTAAGCCTTTTGTTTCATACACTTCTCCAGTAGCACATAATAGCAAAGGGCTTCCTGTAAGACTGGGTGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTATGGTCCTACATGCCGCTACAATCATCCTGACAGAAATGTAATTAGTCCAGTGGTTGCTGCATTGGGCCATTCTGTTTTGACATCCTCAGCTAACCTTAACCTTGGAACTATTAATCCAGCTGCATCAATTTATCAAGCTATTGACCCCAGATTGTCAAGTGCAACGTCTCAGGTGGGAATTGGACAAACTGTCTATCCTCAACGACCTGGTCAGATTGAATGTGATTACTATATGAAGACTGGGGAGTGTAAGTTTGGGGAAAGATGCAAGTTCCATCATCCAATTGACCGCTCAGCACCATCACTGTCAAAGTTGGCTCCACAACAAACTGTTAAACTCACTCTCGCAGGATTACCAAGGAGAGAGGGTGCTGTCATTTGTCCATATTATTTGAAAACTGGAACCTGTAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCTCCTGGAGAAGTTATGGAGATGGCAAAATCACAAGGAACATCTGCAACCAATGGAGGGGAAGCAAATGCCGACGAGAATCAGGAATAG 1623 0.4596 MANQLYLYGYSPTNGGASPPSPVAAAATATAATPPLYLPSSRYLPPDMYLSHRKEAALRYHSYASSDVDIGPPGVSTRISGTAVGPASSTTTHLLSQSSWPAAIAAAAAAANVGSATLDPIINNMKRSSDALYHPTVLSTHNTFGQSEAWYSTNSLTKRPRYESASHLPIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPNAVTSETLPERPGEPDCPYFLKTQRCKFGSNCKFNHPKDFFENADVSALPERPSEAPCAFYMKTGRCKFGVSCKFHHPKDMEIQLSEEQNDAVEQTQFTTKTERATGDTQPIKPFVSYTSPVAHNSKGLPVRLGEVDCPFYMKTGSCKYGPTCRYNHPDRNVISPVVAALGHSVLTSSANLNLGTINPAASIYQAIDPRLSSATSQVGIGQTVYPQRPGQIECDYYMKTGECKFGERCKFHHPIDRSAPSLSKLAPQQTVKLTLAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSATNGGEANADENQE 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2117 540 SUPERFAMILY CCCH zinc finger 489 512 IPR036855 GO:0046872
Glsi04g2117 540 SUPERFAMILY CCCH zinc finger 434 460 IPR036855 GO:0046872
Glsi04g2117 540 FunFam Zinc finger CCCH domain-containing protein 37 212 259 - -
Glsi04g2117 540 ProSiteProfiles Zinc finger C3H1-type profile. 267 295 IPR000571 GO:0046872
Glsi04g2117 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 294 IPR000571 GO:0046872
Glsi04g2117 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 489 512 IPR000571 GO:0046872
Glsi04g2117 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 373 IPR000571 GO:0046872
Glsi04g2117 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 176 200 IPR000571 GO:0046872
Glsi04g2117 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 435 458 IPR000571 GO:0046872
Glsi04g2117 540 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 253 IPR000571 GO:0046872
Glsi04g2117 540 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Glsi04g2117 540 SUPERFAMILY CCCH zinc finger 231 254 IPR036855 GO:0046872
Glsi04g2117 540 SUPERFAMILY CCCH zinc finger 175 201 IPR036855 GO:0046872
Glsi04g2117 540 Gene3D - 211 261 - -
Glsi04g2117 540 Gene3D - 134 210 - -
Glsi04g2117 540 ProSiteProfiles Zinc finger C3H1-type profile. 432 460 IPR000571 GO:0046872
Glsi04g2117 540 ProSiteProfiles Zinc finger C3H1-type profile. 485 513 IPR000571 GO:0046872
Glsi04g2117 540 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Glsi04g2117 540 SMART c3hfinal6 174 201 IPR000571 GO:0046872
Glsi04g2117 540 SMART c3hfinal6 485 512 IPR000571 GO:0046872
Glsi04g2117 540 SMART c3hfinal6 432 459 IPR000571 GO:0046872
Glsi04g2117 540 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Glsi04g2117 540 SMART c3hfinal6 267 294 IPR000571 GO:0046872
Glsi04g2117 540 MobiDBLite consensus disorder prediction 520 540 - -
Glsi04g2117 540 FunFam zinc finger CCCH domain-containing protein 37 430 526 - -
Glsi04g2117 540 Gene3D - 262 382 - -
Glsi04g2117 540 SUPERFAMILY CCCH zinc finger 351 375 IPR036855 GO:0046872
Glsi04g2117 540 MobiDBLite consensus disorder prediction 521 540 - -
Glsi04g2117 540 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Glsi04g2117 540 PANTHER PROTEIN PHOSPHATASE RELATED 334 391 - -
Glsi04g2117 540 SUPERFAMILY CCCH zinc finger 270 295 IPR036855 GO:0046872
Glsi04g2117 540 Gene3D - 431 527 - -
Glsi04g2117 540 ProSiteProfiles Zinc finger C3H1-type profile. 174 202 IPR000571 GO:0046872
Glsi04g2117 540 FunFam Zinc finger CCCH domain-containing protein 37 130 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2117 Glsi-ChrGlsi04 72876536 72892633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2117 345 527 C2H2 Transcription Factor Family AT3G02830 35.870 2.29e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi04g2117 zf-CCCH 1.7e-10 CL0537