Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2112 ATGCCTTCAGGCAGTGGACAATTGACAGTTCCTCCGGGCTTTAGATTCCATCCTACTGATGAGGAGCTTCTTTACTATTACCTGAGGAAGAAAGTCTCTTATGAAGCCATTGATCTTGATGTTATCAGAGAAGTAGATCTCAACAAACTTGAACCTTGGGACCTCAAAGAGAAATGTAGGATAGGATCAGGGCCTCAGAACGATTGGTATTTCTTCAGCCACAAAGACAAGAAGTACCCTACAGGAACAAGAACAAATAGAGCAACCACAGCTGGGTTTTGGAAAGCAACAGGGAGGGACAAGGCCATATACCTCAGTAATGGAAGGAGGATAGGCATGAGAAAAACCCTAGTCTTCTACACTGGCCGGGCTCCCCATGGCCAAAAGACTGACTGGATCATGCATGAGTATCGCCTTGACGAAGATGATGCAGAGATTCAGGAAGATGGATGGGTAGTGTGCAGGGTATTCAAGAAGAAGAATATCAACAGAAATTTCCAACCAGAAATCGAAGAAGAACACTTAATAACCCAGATGCGAACAAGTGGTTCTTGCCAAGTACCGGAACCAAAACATCAACATCATCGCATGCAAGGACTCTATGATTATAGCTTTGATGGGTCAATGCACCTTCCACAATTATTCAGTCCAGAAGCACCCACACTCTTTGCCTCATCATCCTCCATGAACGCCATGGACGTCCTTGAGTGCTCTCAGAACTTGCTTAGGCTCACAACAACAACACCCAGTGATTGTGCACTTAACCTCATGCAACAACAACGAGGAGAGAGGTTCATTAATGGTGATCAATGGTTATTCTTGGACAAGCTTCTTGGTTCAAACCAGGGCATGGATCATCATCATCAACAACACTTACAAAGCAAATGTAACCCTACACATCCTGCTGCTATTGTGGGTACTTCAACCCAGAAACTTTTCCCATTTCATTACCTTGGTTGCGATCACACTCATGACATTATGAAATTCTCCAAGTAG 996 0.4408 MPSGSGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKEKCRIGSGPQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYLSNGRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDAEIQEDGWVVCRVFKKKNINRNFQPEIEEEHLITQMRTSGSCQVPEPKHQHHRMQGLYDYSFDGSMHLPQLFSPEAPTLFASSSSMNAMDVLECSQNLLRLTTTTPSDCALNLMQQQRGERFINGDQWLFLDKLLGSNQGMDHHHQQHLQSKCNPTHPAAIVGTSTQKLFPFHYLGCDHTHDIMKFSK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2112 331 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Glsi04g2112 331 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Glsi04g2112 331 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Glsi04g2112 331 FunFam NAC domain-containing protein 19 163 - -
Glsi04g2112 331 Gene3D NAC domain 19 163 IPR036093 GO:0003677|GO:0006355
Glsi04g2112 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2112 Glsi-ChrGlsi04 72777049 72779199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2112 3 331 NAC Transcription Factor Family AT1G79580 51.047 2.09e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi04g2112 NAM 1.2e-37 No_clan