Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2077 ATGGAACTTGGTTTGAGCTTAGGAGACGCTGCAAAGCCTTTTGTTTTCATGGAAAAGCCTCCTGAAGCTTTCGACCATCTCGGGTTAGGCCTCAACACAACCTTATCAATCGGTCCAAATATTATTAGCAAAAGCTGCGAAGAAGAAGAAGAAGAAGAAGCAAAGCAGAAGGAAAATCACAGTATTGATCATCATCAGGATCATGATGAAGCTACAAATGATCCATTTTATCCTACTGTACAGCTTGATCTTCTTCCTCACATCCCAGTTGTAGCTCGTAATATTAACCCACCTTCTCAAATCTCCCTGCCATGGCTTTCTCCTTCTCAAAACGGTGAGGCGGCTTCTTCAAGGGTCTTGAACGTGAACAGGTTGCTGCCGGTGGCGAAGGAGGCAGCGAGGGAGGAGGAGTCAGAGGAAACGGCAGCGGTATCATGGTCTCCTCCGAACAGCGGAGCGACGTCATCGTTTCAGATGGATCTGTGTATATACAGCAGAGGAGGGAGTATGAGTGGGGGGAAGAGGGAGTCAGATGGTGAGGCTCCTTATTATGATCAAAGGGCTTCTTCTAGAGCAAGTGATGAAGATGACAATAACGGTGGAAGTACTAGGAAGAAGCTCAGGCTTTCTAAAGAACAATCTGCTTTTCTTGAAGAAAGTTTCAAAGAACACCACACTCTTAACCCTAAACAAAAGCAAGCTCTTGCGAAACAACTCAATCTTCGTCCTCGTCAAGTCGAAGTCTGGTTTCAAAATAGAAGAGCAAGAACCAAGTTGAAGCAGACAGAGGTAGACTGTGAGTACCTGAAGAGGTGCTGTGAGACACTATCGGAGGAGAATAGGAGGCTTCACAAAGAGCTTCAAGAACTAAGAGCTTTGAAGACTAATTCAAACCCATTCTTCATGCAATTACCAGCCACTACCTTGACCATGTGCCCTTCTTGTGAGCGAGTTGCCTCCAATCCCACCTCATCTTCTTCTGCAACTCCTTCATCTATAGCCACTACCAAAAGTACCACTGATTCAACCTCCAAAGCCATCGGATTCCCCCTTGGCAAAAAACCCATGTTTTATCCTTTTGTTCACTCCCAACCACACCAATCCAATGCATCTTGA 1116 0.4552 MELGLSLGDAAKPFVFMEKPPEAFDHLGLGLNTTLSIGPNIISKSCEEEEEEEAKQKENHSIDHHQDHDEATNDPFYPTVQLDLLPHIPVVARNINPPSQISLPWLSPSQNGEAASSRVLNVNRLLPVAKEAAREEESEETAAVSWSPPNSGATSSFQMDLCIYSRGGSMSGGKRESDGEAPYYDQRASSRASDEDDNNGGSTRKKLRLSKEQSAFLEESFKEHHTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLSEENRRLHKELQELRALKTNSNPFFMQLPATTLTMCPSCERVASNPTSSSSATPSSIATTKSTTDSTSKAIGFPLGKKPMFYPFVHSQPHQSNAS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2077 371 CDD bZIP 253 292 - -
Glsi04g2077 371 Pfam Homeodomain 204 258 IPR001356 GO:0003677
Glsi04g2077 371 FunFam Homeobox-leucine zipper protein 18 188 265 - -
Glsi04g2077 371 MobiDBLite consensus disorder prediction 46 72 - -
Glsi04g2077 371 MobiDBLite consensus disorder prediction 46 77 - -
Glsi04g2077 371 CDD homeodomain 204 261 IPR001356 GO:0003677
Glsi04g2077 371 MobiDBLite consensus disorder prediction 319 347 - -
Glsi04g2077 371 MobiDBLite consensus disorder prediction 189 208 - -
Glsi04g2077 371 SMART halz 260 304 IPR003106 GO:0006355|GO:0043565
Glsi04g2077 371 MobiDBLite consensus disorder prediction 168 208 - -
Glsi04g2077 371 ProSitePatterns 'Homeobox' domain signature. 235 258 IPR017970 GO:0000981|GO:0006355
Glsi04g2077 371 Gene3D - 208 258 - -
Glsi04g2077 371 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 58 341 - -
Glsi04g2077 371 Coils Coil 273 296 - -
Glsi04g2077 371 ProSiteProfiles 'Homeobox' domain profile. 200 260 IPR001356 GO:0003677
Glsi04g2077 371 MobiDBLite consensus disorder prediction 131 154 - -
Glsi04g2077 371 Pfam Homeobox associated leucine zipper 260 294 IPR003106 GO:0006355|GO:0043565
Glsi04g2077 371 SMART HOX_1 202 264 IPR001356 GO:0003677
Glsi04g2077 371 MobiDBLite consensus disorder prediction 319 346 - -
Glsi04g2077 371 SUPERFAMILY Homeodomain-like 186 261 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2077 Glsi-ChrGlsi04 72233619 72235025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2077 188 362 Homeobox Transcription Factor Family AT4G37790 62.147 1.11e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi04g2077 Homeodomain 2.9e-16 CL0123