Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2073 ATGGAAAAGCAGCAGAACCAAAACCACCATAACCCAGACAAGAAGAACAGCCACCACCAAACGTGGGGTACGTGGGAGGAGTTGTTGCTGGCTTGCGCCGTCAAGCGCCATGGCTTCAAGGACTGGGATACCGTCGCCATGGAGGTCCAGAACCGCACCACCCTCCCTCAACTCCTCACCACCGCCCGCAACTGCGAGCAGAAATTCCACGATCTCAAACGCCGATTCACCGCCCAATGCAACGACGTCGTTCTGGAGCCTCAGGAGAACGGCGCTCCCCTCGGCGATACGGTCGATCATGTTCCCTGGCTCGACGAATTGCGTAAACTCCGGGTCGCCGAGCTCCGGCAAGAGGTCCAACGCTCCGACGTCTCCATTCTGTCTTTGCAGCGGAAGGTGAAAAGGTTGGAGGAAGAGAGAGAACAGAGCTTGAAGGAGAATGGCGGAGAACGTGATGAGAAACCAGATCTGGCCGACTCCGGGAAGCCGGAAAACGACGAAAAAAACGGAGAAGAAGAAGAGACTGAGCCGACGAATTCCGAGCCGGGGAAACGGCTCGATGATGAAGATAATAGTAATAATAATAGTAAACTACCAACCGGTGACGAATCCGACCGGGAGAACCAGTCGGTTAATGAGTCCAATTCGACCGGTTCGAAGTCCGACGAAGGGAAAACCGGGGAGGAAGACGTGAAGCTAGAACCAAGCCCGGTCCATTCCGGTCCGAAAGAACCGGATCCGGTTGGACGAAGGCCTAAACCGGTTAGGGAAGAATCTAATAACGGAAGCTACGATACCGCGGCTAAAGTCCCAACGTACGGGTCACTGCCTCCGAGTGAGGAGAGGAAAGTGGAGGACTCGTCCGAGTTAAGAGACTCGGTGGCTCACTCGAGGGATGAAGGTGAGGGAGGGACAAGGGAGAGCAGCGAGGTTCAGAGCTCGGCGAGCTTGACGAGGAAGAGGAAGACGCGGCGGAGAAAGAAGGTTTCGGGTGGCGGAGACGGTGGCGAGGAGACGCCGGAGAACGACGAGGTGGCCGTGAAATCACAGCCGTTGGTTGGCGTATTGGAGTTGATCAAAGGACATGAACACAGCTCATTGTTCGAGCGTCTCGAAAGCCAGGAATCGGATAGATACAAAAACATAGTGCGCCAGCACGTGGACTTGGAAACAATACAAACGCGACTCCAAAAGGGCTCCTATTCCTCCTGCACTCACGCATTCTTCCGAGACCTCCTCCTTCTCTTCAACAACGCAACCGTCTTCTTCCCCAAAGACTCCATTGAATCAACCACCGCAAAGCAACTGCGACGCCTCGTCTCCGTCGAATTCATGAACCGTATTCAATCTCAACCTGACCCGCTTCCCCAGAACCCTGATTCTTCATTGCTGCCACCAAATAACCCTCCACCACCATCACAAGCCAAGCCCCCGGATTCCTTGCTTTCCAAACACAAAGCAACTGCTCCTATATTAGTATGCCGAAAACGCACCTCAGTCTCAGCTAAACCTTCCTCAGCACCCACCTTTGGTCAAAAGGGTGAGCAGATTTTAAGGCATGAGAAGAAACCAACTTCGGTTCCAAAGCAACCCTTGAAGCCATCTTCTAGTTCTGATACAGATGAAGAGCCTCCTCCTAAGGCGAAGGAAAAGCCTGTGACTGTGACTGGAGCAAGAAGTCTAAGGAGAAGCAATAAAAATCTGATCAGTGGTGGCAACAACCTCAACAACAACAAGAAGCTGCAGTCCGGCAGTTCCACCCCAAAAGCAAGCTCTCCCAAACCAGATAATAAGAGTAAAGCAGATGCATCTGACAAAAAGAGGAGTGCAGCTGCAGATTTCTTGAAAAGGATAAAGAGAAACGGCCCGGCAGAATCGTTAAGGAGTGGCAGTGGTGGCGCCGGCAGCAGCAGCAGAGGTGGGGTTAGTGGGAAGGAACAGAAGAAAGTGATGAGTAGTGGGAAGGGGGATAATAAGGGCAAAGAAAGGGTATTGAGAAATAGTGGTGGTGGTTCAGGAGATAAAAAGAAGGAGAATATTGAGAGTAGCGGTCAATCAAAGCGAAGTGTTGGGAGGCCTCCGAAGAGGGCTGCAGAAACTCATGCTGCAGTTTCTGCAAAGCGTGGAAGGGAAAGTAGTAGTGGGAAGGATAAAAGGCCCAGGAAACGAACTAGGAAGTAG 2181 0.5236 MEKQQNQNHHNPDKKNSHHQTWGTWEELLLACAVKRHGFKDWDTVAMEVQNRTTLPQLLTTARNCEQKFHDLKRRFTAQCNDVVLEPQENGAPLGDTVDHVPWLDELRKLRVAELRQEVQRSDVSILSLQRKVKRLEEEREQSLKENGGERDEKPDLADSGKPENDEKNGEEEETEPTNSEPGKRLDDEDNSNNNSKLPTGDESDRENQSVNESNSTGSKSDEGKTGEEDVKLEPSPVHSGPKEPDPVGRRPKPVREESNNGSYDTAAKVPTYGSLPPSEERKVEDSSELRDSVAHSRDEGEGGTRESSEVQSSASLTRKRKTRRRKKVSGGGDGGEETPENDEVAVKSQPLVGVLELIKGHEHSSLFERLESQESDRYKNIVRQHVDLETIQTRLQKGSYSSCTHAFFRDLLLLFNNATVFFPKDSIESTTAKQLRRLVSVEFMNRIQSQPDPLPQNPDSSLLPPNNPPPPSQAKPPDSLLSKHKATAPILVCRKRTSVSAKPSSAPTFGQKGEQILRHEKKPTSVPKQPLKPSSSSDTDEEPPPKAKEKPVTVTGARSLRRSNKNLISGGNNLNNNKKLQSGSSTPKASSPKPDNKSKADASDKKRSAAADFLKRIKRNGPAESLRSGSGGAGSSSRGGVSGKEQKKVMSSGKGDNKGKERVLRNSGGGSGDKKKENIESSGQSKRSVGRPPKRAAETHAAVSAKRGRESSSGKDKRPRKRTRK 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2073 726 MobiDBLite consensus disorder prediction 175 192 - -
Glsi04g2073 726 MobiDBLite consensus disorder prediction 1 20 - -
Glsi04g2073 726 MobiDBLite consensus disorder prediction 595 623 - -
Glsi04g2073 726 MobiDBLite consensus disorder prediction 279 306 - -
Glsi04g2073 726 Pfam Myb-like DNA-binding domain 20 54 IPR001005 -
Glsi04g2073 726 Gene3D - 340 451 IPR036427 GO:0005515
Glsi04g2073 726 MobiDBLite consensus disorder prediction 137 346 - -
Glsi04g2073 726 SUPERFAMILY Homeodomain-like 15 54 IPR009057 -
Glsi04g2073 726 ProSiteProfiles Bromodomain profile. 379 430 IPR001487 GO:0005515
Glsi04g2073 726 MobiDBLite consensus disorder prediction 701 718 - -
Glsi04g2073 726 SMART sant 18 75 IPR001005 -
Glsi04g2073 726 CDD Bromodomain 355 444 - -
Glsi04g2073 726 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 6 726 - -
Glsi04g2073 726 MobiDBLite consensus disorder prediction 222 258 - -
Glsi04g2073 726 SUPERFAMILY Bromodomain 348 444 IPR036427 GO:0005515
Glsi04g2073 726 Coils Coil 119 153 - -
Glsi04g2073 726 MobiDBLite consensus disorder prediction 650 683 - -
Glsi04g2073 726 MobiDBLite consensus disorder prediction 137 168 - -
Glsi04g2073 726 SMART bromo_6 122 449 IPR001487 GO:0005515
Glsi04g2073 726 MobiDBLite consensus disorder prediction 449 726 - -
Glsi04g2073 726 MobiDBLite consensus disorder prediction 558 594 - -
Glsi04g2073 726 Pfam Bromodomain 355 433 IPR001487 GO:0005515
Glsi04g2073 726 CDD SANT 21 73 IPR001005 -
Glsi04g2073 726 Gene3D - 12 72 - -
Glsi04g2073 726 MobiDBLite consensus disorder prediction 458 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2073 Glsi-ChrGlsi04 72154571 72159770 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi04g2073 Bromodomain 1.1e-10 No_clan