Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2041 ATGGGCTTAGGCCCAATTCTGCCCTTCGTTGCTTCTTCTGCTTCTGCTTCCGCTTCCGCTTCTTCTTCTTCTTCTTCCTTTCCACTCTTGACAACAATGGCTTTATACTCCTCTCTACTCTCACCAACCAATCTTCTTTCCAATCACACTAAATCCTTTACAATCCCATCAAATTTCTCTAACCACATTTTCAAAGCTACCCACTTACAACCCATGCTCAAATCGACGCCTTCTCTGATAGTTACGACACCCAGACGCTATCAGACACCCTTTGCTGTTGCTGAAGAAACCGCAGTCACCTCGCCGGACCCGAAATCCCAGGCGGCGAGGAAGCTCTACATTGGCAACATTCCACGCAATGTCAATAACGCTGAGCTCACCCGGATAGTTGAAGAGCATGGCGCTGTTGAGAAAACGGAGGTTATGTATGATAAATACTCTGGAAGGAGTCGTCGCTTTGCATTTGTTACGATGAAGACTGTTGAGGATGCAAATGCAGTAATTGAGAAGCTAAACGGCACTGAAATTGGTGGGCGTCAGGTCAAAGTAAATGTAACAGAAAAACCTTTGTCAACTGTGGATTTGTCTCTTCTCCAGTCAGAGGAATCTGAATTTATTGACAGTCCCCACAAAGTATATGTAGGAAATCTTGCAAAGACTGTAACAACAGATATACTTAAAGACTTCTTCTCTACAAAGGGAAAAGTTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAATCCAGCGGGTTTGGTTTTGTCTCGTTTTCTTCAGATGAGGATGTAGAAGCTGCAATCTCATCTTTTAACAATTCTTTGTTAGAAGGGCAAAAAATTCGAGTGAATAAGGCTTAG 861 0.4367 MGLGPILPFVASSASASASASSSSSSFPLLTTMALYSSLLSPTNLLSNHTKSFTIPSNFSNHIFKATHLQPMLKSTPSLIVTTPRRYQTPFAVAEETAVTSPDPKSQAARKLYIGNIPRNVNNAELTRIVEEHGAVEKTEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGRQVKVNVTEKPLSTVDLSLLQSEESEFIDSPHKVYVGNLAKTVTTDILKDFFSTKGKVLSAKVSRVPGTSKSSGFGFVSFSSDEDVEAAISSFNNSLLEGQKIRVNKA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2041 286 SUPERFAMILY RNA-binding domain, RBD 100 187 IPR035979 GO:0003676
Glsi04g2041 286 CDD RRM2_PSRP2 208 286 - -
Glsi04g2041 286 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676
Glsi04g2041 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 286 IPR000504 GO:0003723
Glsi04g2041 286 SMART rrm1_1 111 184 IPR000504 GO:0003723
Glsi04g2041 286 SMART rrm1_1 211 284 IPR000504 GO:0003723
Glsi04g2041 286 FunFam 30S ribosomal protein 2, chloroplastic 197 286 - -
Glsi04g2041 286 Gene3D - 83 192 IPR012677 -
Glsi04g2041 286 CDD RRM1_PSRP2_like 111 190 - -
Glsi04g2041 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Glsi04g2041 286 PANTHER OS02G0815200 PROTEIN 32 285 - -
Glsi04g2041 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 282 IPR000504 GO:0003723
Glsi04g2041 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Glsi04g2041 286 Gene3D - 198 286 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2041 Glsi-ChrGlsi04 70688055 70692696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2041 103 286 Eukaryotic Initiation Factors Gene Family AT1G22760 28.796 2.10e-11 62.4