Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2040 ATGGCGCCGAAGGAGAGAACACGAAGAGTTAGCAGGAACCCTGAATTGATCAGGGGAATTGGCAAGTACTCAAGATCGAAGATGTACCACAAGAGGGGTCTCTGGGCAATCAAGGCTAAGAACGGCGGTGTTTTTCCTCGGCACGATCCCAAGCCTAAGCCGGCAGCTCCCGCTGAGAAGCCCCCGAAGTTCTATCCAGCTGACGATGTGAAGAAGCCCCTCGTCAACAAGCACAAGCCCAAACCTACTAAGCTCAGGGCTAGCATTACGCCGGGGACAGTGTTGATACTTCTTGCAGGGAGATTCAAGGGAAAGAGAGTAGTGTTCCTGAAGCAGCTTCCTTCTGGGTTGCTTCTTGTTACTGGTCCATTCAAGATAAATGGAGTTCCTTTGAGACGTGTAAACCAGTCTTATGTCATTGGGACATCCACCAAGGTGGATATTTCTGAAGTTAATGTGGAAAAGTTTGATGACAAATACTTCGCCAAGAAAGTTGAGAAAAAGAAGAAAAAAGGAGAGGGCGAATTTTTTGAGGCAGAGAAGGAGGAGAAAACTGTGATCCCTCAGGAGAAAAAAGATGACCAAAAAGCTGTGGACGCCGCATTGCTGAAAGCCATTGAGAGTGTTCCAGACTTGAAGGCTTACTTGGGTGCGAGGTTTTCTCTCCAGGCAGGCATGAAGCCTCATGAGCTAGTCTTCTAA 702 0.4801 MAPKERTRRVSRNPELIRGIGKYSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKPAAPAEKPPKFYPADDVKKPLVNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISEVNVEKFDDKYFAKKVEKKKKKGEGEFFEAEKEEKTVIPQEKKDDQKAVDAALLKAIESVPDLKAYLGARFSLQAGMKPHELVF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2040 233 CDD KOW_RPL6 81 233 IPR041997 -
Glsi04g2040 233 SUPERFAMILY Translation proteins SH3-like domain 87 177 IPR008991 -
Glsi04g2040 233 MobiDBLite consensus disorder prediction 42 85 - -
Glsi04g2040 233 Gene3D - 87 171 IPR014722 -
Glsi04g2040 233 PANTHER 60S RIBOSOMAL PROTEIN L6 6 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Glsi04g2040 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Glsi04g2040 233 FunFam 60S ribosomal protein L6 87 171 - -
Glsi04g2040 233 Pfam Ribosomal protein L6, N-terminal domain 3 61 IPR005568 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2040 Glsi-ChrGlsi04 70686269 70687852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2040 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 82.833 4.32e-124 349