Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2032 ATGAGTGTTTTGTATAGTCCTACTCTCAATTACTCAAGTGGGGATCGAAGGAGAAACCCAGAAATGGATTCAAACATTGGCAATCTACAACTGAACTGTAACAAGCTAAATTCTGGGTTATTATTGAGGTACCGTTCTGCTCCGAGCTCATTGCAGGAAAGCCTTGTTGACACTAGCAGCCATGGCTGTGTCAATGAGGAAGCTTTTAGAGGTGAGGATGATCAGCATCGTTATCTTCCATCTTCTTCAAGCCCAGAAATGGAAACCCTTTTGGCCAAATTGGTTTCATCGAACACTGGGTGGATTAATTCGGCATCATGTTTGCCGGAGTTTGGAGGGAAGCCTGTAAAGCAGGAGAAAGCAGGGGAATCTGTTTCAAACTCTTACGGTTCTCCTCAGCTAATTTACCAATCTCAGCAAATTCCAGGCTTTCCCAATGGTTCTTTGGGTTCTGGGAATGGTTTTGACGGGACGTTTAGTCCAGTAAATTCCTTGGTTTCAGAGAATTCTCCTCAATCCAAAATGGTACCCAGGAATTCATCCAATCTCATTAGGCAGAAAAGCTCCCCTGCTGGATTATTCAACAATTCCCCTGTTCAAAATGGTTTTGCAGGATGGAGAGAGATGGGAAGTTTTAGAGCTTGTGATGTCTCAAATGGGCAGGCTTCAACATCAACCAGTGGGTTGAATGGTACTCTAACCTTCTCATCAAGGCCATCCTCTTGTTCAAGCCAGTTGCCTGATATAGCTGAAAATGGGAATGAAAGCTGTGTTGAAAGTGCAAGAAACCTGGGAAATGACAATGGCACCACCACCAACTGTTATATGCCCAGCTTCAGAAGTGACTTCTGGGATGGTGCTTCTGCTTTCAATGATCAAAAACCGGCCGGTGACAATGATCAAATCATGTTTTCTACTTCAGATGCTTTTGAAACCCAGAATGCAGATTTTGGGTATCAGAAGCTGGGTTTGGCTCATCATTTGAGTCTGCCTAGTTCTTCTTCTAAAATGGGTGCGATGGAGAAGTTATTGCAGATTCAAGAATCTGTTCCTTGTAAAACTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGTATTGCAGAGAGGGTAAGAAGAACAAAAATTAGTGAAAGAATAAAGAAACTGCAAGAGCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGACATGTTGGATTTGGCAGTTGACTATATTAAAGACTTGCAGAGCCAAGTTAAGATACTCACAGATACTAAGGCAAAGTGCAAGTGTTCAAGTTATCAGAAGCAGAACTGA 1302 0.4278 MSVLYSPTLNYSSGDRRRNPEMDSNIGNLQLNCNKLNSGLLLRYRSAPSSLQESLVDTSSHGCVNEEAFRGEDDQHRYLPSSSSPEMETLLAKLVSSNTGWINSASCLPEFGGKPVKQEKAGESVSNSYGSPQLIYQSQQIPGFPNGSLGSGNGFDGTFSPVNSLVSENSPQSKMVPRNSSNLIRQKSSPAGLFNNSPVQNGFAGWREMGSFRACDVSNGQASTSTSGLNGTLTFSSRPSSCSSQLPDIAENGNESCVESARNLGNDNGTTTNCYMPSFRSDFWDGASAFNDQKPAGDNDQIMFSTSDAFETQNADFGYQKLGLAHHLSLPSSSSKMGAMEKLLQIQESVPCKTRAKRGFATHPRSIAERVRRTKISERIKKLQELFPKSDKQTSTADMLDLAVDYIKDLQSQVKILTDTKAKCKCSSYQKQN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2032 433 MobiDBLite consensus disorder prediction 160 180 - -
Glsi04g2032 433 FunFam Transcription factor bHLH130 family 361 430 - -
Glsi04g2032 433 SMART finulus 366 416 IPR011598 GO:0046983
Glsi04g2032 433 MobiDBLite consensus disorder prediction 1 15 - -
Glsi04g2032 433 Pfam Helix-loop-helix DNA-binding domain 366 411 IPR011598 GO:0046983
Glsi04g2032 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 360 410 IPR011598 GO:0046983
Glsi04g2032 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 362 426 IPR036638 GO:0046983
Glsi04g2032 433 Gene3D - 361 432 IPR036638 GO:0046983
Glsi04g2032 433 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 88 431 - -
Glsi04g2032 433 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2032 Glsi-ChrGlsi04 70609474 70613767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2032 22 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.941 6.19e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi04g2032 HLH 2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g0580 14 6706354 6709213 Glsi04g2032 04 70609474 70613767 ECH
Glsi04g2032 04 70609474 70613767 Glsi04g2032 04 70609474 70613767 ECH