Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2012 ATGTCAAAGAGAACCTATCAGAAAGGGTTGTGTGCTTATGGTAGTCAATGCAGATATAAACATGTCAAAGCTTCTCTAGCACAATCTTCAGCAAATGGACGCCAATCCCTGACTTCTGATTATGGTGTAGCTCGTACTACTAGAGGAACATCAAGTTGGGTTCCAAAGGCTACTAAGTTTTCTTCCTCTAACATACATGGCAACAGTCTAAAACGCAAGAGTAAGAATTTTGAAGGGAATGGTGATGTTGGTGAATCCAGCTCTGCTTTACCATCCGAGCATTTATTTTGTAAGTTTCCTGCTTCCAATTGCCCCTTAGGAGAAAAATGTTCTTTTATTCATGGTGACCAATGTGTATACTGTAAAAAGTTCTGCTTGCATCCTACTGAACTAAAGGAAAGAAGGCATCATCTGAGTACTTGTGAGAAAAAGGAAAAATATCTTCAGGCATTGTTAGACAGTCAAGAAATAGAATGCAACATTTGCCTGGAGCATGTTCTTTCAAAGCCTAAAGAAGCTAAACGTAAGTTTGGGGTGCTTCCTGAATGCGACCATGCTTTCTGTTTATCATGTATCAGTTATTGGCGAAGGAGTGCCCCAACCTTGAAGATGGATGTCACTAATACCAAGACAGTAAGGACCTGCCCTGTGTGCCACAAGCTATCATATTATGTCATTCCAAGCAATATGTGGTATTCCACAAAGGAAGAGAAACAGGAACTTATTTACAACTACAAGACGAACTGCAAGTTAATTGATTGCAAGCATTTTGACTTTGGAAATGGGAGGTGTCCATTTGGGACTAACTGTTTCTACAAGAGGCAGCTGGTGCTGGTTCATAATCAGACACCTTTAGTTCTGAAGAACTTGATTAATTCGAGATTATGCCTTTATCAAGGAGGATGGGTGGTTAAGTTCCCGTCTGATTCTGAAGATTATGATGATGAAGAAATGGACTTTTATAATATGGTTGTTATACCAGAGGCGCTTGGTGCTGGTTCAGAGTCAGGCACCTATAGTGCTGGTTTAGTGTCAGGCACCTATAGTTCTGAAGAATCAGATTAA 1065 0.4019 MSKRTYQKGLCAYGSQCRYKHVKASLAQSSANGRQSLTSDYGVARTTRGTSSWVPKATKFSSSNIHGNSLKRKSKNFEGNGDVGESSSALPSEHLFCKFPASNCPLGEKCSFIHGDQCVYCKKFCLHPTELKERRHHLSTCEKKEKYLQALLDSQEIECNICLEHVLSKPKEAKRKFGVLPECDHAFCLSCISYWRRSAPTLKMDVTNTKTVRTCPVCHKLSYYVIPSNMWYSTKEEKQELIYNYKTNCKLIDCKHFDFGNGRCPFGTNCFYKRQLVLVHNQTPLVLKNLINSRLCLYQGGWVVKFPSDSEDYDDEEMDFYNMVVIPEALGAGSESGTYSAGLVSGTYSSEESD 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2012 354 Pfam Zinc finger, C3HC4 type (RING finger) 159 218 IPR018957 GO:0046872
Glsi04g2012 354 SMART ring_2 159 218 IPR001841 -
Glsi04g2012 354 ProSiteProfiles Zinc finger C3H1-type profile. 248 277 IPR000571 GO:0046872
Glsi04g2012 354 SUPERFAMILY RING/U-box 148 225 - -
Glsi04g2012 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 225 IPR013083 -
Glsi04g2012 354 ProSiteProfiles Zinc finger C3H1-type profile. 1 24 IPR000571 GO:0046872
Glsi04g2012 354 ProSitePatterns Zinc finger RING-type signature. 183 192 IPR017907 -
Glsi04g2012 354 SMART c3hfinal6 1 23 IPR000571 GO:0046872
Glsi04g2012 354 SMART c3hfinal6 92 116 IPR000571 GO:0046872
Glsi04g2012 354 SMART c3hfinal6 248 276 IPR000571 GO:0046872
Glsi04g2012 354 ProSiteProfiles Zinc finger RING-type profile. 159 219 IPR001841 -
Glsi04g2012 354 CDD RING-HC_MKRN 157 218 - -
Glsi04g2012 354 MobiDBLite consensus disorder prediction 64 85 - -
Glsi04g2012 354 PANTHER MAKORIN-RELATED 5 275 IPR045072 GO:0000209|GO:0061630
Glsi04g2012 354 Gene3D - 4 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2012 Glsi-ChrGlsi04 70331417 70336999 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi04g2012 zf-C3HC4 7e-06 CL0229