LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g2009	ATGACAGATCCTCAATCATGGTTCAACTTCATACCCCTTCACCCTCCTCACTACTCTTCTAATTACACTTCTCAATCCAACCTCTGTTCCTTATACCCTCTTGCTTACACCTCTAATAACAACATATCATCATTTTCCATTCATCAATTCCAAACCCCTAATTCCCCTTCGGCTCCTCCTCCTCCTTCCCCTCCTCTCAAGGAAGCCCTTCCCCTCCTAAACAATTTAAGCCTAAAAAATCAGCAGGACAATGAACCCTCAAAATATAGTGCAGAAGTACTAGAAGATCGGGAAGAGAACAAGAGAAGGGATCACAAAGAGAATCAGAATCGTCTTATTTTCACTGGTAGTAATGAAGAAGAAGATGATGATAGAACTGTGACTGTAGCCCTACGCATAGGGCTTCCTAGAATGAGTAGTAGTACTTCTTCTCATATGGGGTCAAGAAGGCAGATCTCAACTTCTGCAAAAATAGCTGAAAAAGAGGAAGTGGGTGTAGTTTCTGGACACCCTTTTGATAAATTAAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCATGCCCTGTGTGCTCCAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAGAGGAACACAACCGACAGCCATGCTTAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTTAGAACCCTTCAAACACATTATAAGAGGAAGCATGGGATCAAACCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCTGTGAAAGGTGATTGGAGAACTCATGAGAAGAATTGTGGCAAAATATGGTATTGTCTTTGTGGGTCTGATTTCAAACACAAGAGATCTCTAAAAGACCACATTAAGGCATTTGGCCAGGGCCATGGAGCTTTTGGCATTGATTGCTTGCAAGAGGAAGATGAAGCAGCCTCAGAGATTGAACAAGATGGGGAGAACTCTGTGTGA	1071	0.4286	MTDPQSWFNFIPLHPPHYSSNYTSQSNLCSLYPLAYTSNNNISSFSIHQFQTPNSPSAPPPPSPPLKEALPLLNNLSLKNQQDNEPSKYSAEVLEDREENKRRDHKENQNRLIFTGSNEEEDDDRTVTVALRIGLPRMSSSTSSHMGSRRQISTSAKIAEKEEVGVVSGHPFDKLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGQGHGAFGIDCLQEEDEAASEIEQDGENSV	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g2009	356	MobiDBLite	consensus disorder prediction	47	121	-	-
	Glsi04g2009	356	SMART	c2h2final6	279	299	IPR013087	-
	Glsi04g2009	356	SMART	c2h2final6	195	217	IPR013087	-
	Glsi04g2009	356	SUPERFAMILY	beta-beta-alpha zinc fingers	188	217	IPR036236	-
	Glsi04g2009	356	PANTHER	ZINC FINGER PROTEIN WIP2	38	352	IPR043584	GO:0003700\|GO:0010468
	Glsi04g2009	356	ProSitePatterns	Zinc finger C2H2 type domain signature.	197	217	IPR013087	-
	Glsi04g2009	356	Gene3D	Classic Zinc Finger	258	330	-	-
	Glsi04g2009	356	MobiDBLite	consensus disorder prediction	54	68	-	-
	Glsi04g2009	356	MobiDBLite	consensus disorder prediction	74	88	-	-
	Glsi04g2009	356	SUPERFAMILY	beta-beta-alpha zinc fingers	263	299	IPR036236	-
	Glsi04g2009	356	Coils	Coil	91	111	-	-
	Glsi04g2009	356	ProSiteProfiles	Zinc finger C2H2 type domain profile.	195	222	IPR013087	-
	Glsi04g2009	356	MobiDBLite	consensus disorder prediction	89	121	-	-
	Glsi04g2009	356	Gene3D	Classic Zinc Finger	194	217	-	-
	Glsi04g2009	356	FunFam	zinc finger protein WIP2-like	194	217	-	-
	Glsi04g2009	356	FunFam	Zinc finger protein WIP2	248	330	-	-
	Glsi04g2009	356	ProSiteProfiles	Zinc finger C2H2 type domain profile.	279	299	IPR013087	-
	Glsi04g2009	356	Pfam	Zinc finger, C2H2 type	195	214	IPR013087	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g2009	Glsi-ChrGlsi04	70284999	70287267	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g2009	127	350	C2H2 Transcription Factor Family	AT3G57670	68.924	4.49e-125	363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Glsi04g2009		zf-C2H2_6	9.6e-05	CL0361