Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2006 ATGAGATGTGAAACTTTTGTTCTCTGTTTGGTTACCGAGAATCCGAGGAAATTGCAAGCTAGGAATGTCAGGAAATGGCCTTTATTGGTTCTAACAAGTTGTGCCTTTCTCGTCAGGATTGTTGAAGCTACCACGGACCACATTCGGTTGAATTCAGAAGAGCTTGACCGTTTGTTTTTAATATATTGTTTCAAAATGAATGATAATAGACAAATGGAAGTGCATTTCATAGATACGGGCTTCCCCTATACTGTTACTGAAAGCTTCATGGACTTCTTTGAAGGCCTTACGCATGTGCCAGTGAATTATGGCCATGCCGCACCCATGCCTGATCAGGAAAGTGTCTACTGGTCGATGAATATGAACCCTTATAAATATGGAATGAGTGGTCCTTTGAGTCCATCTTATTTTGGGTTTCTTGAGCCATTACGCTCACCAATAAGGGAGGTCAACAGGGGAGAGTGGGAATACCCTTCAACAATGACCACTGAGGAGACTGCTACAACAGACACTTCATCCAGAAGAGATGGAGTCACCGGCATGCAGACTATTCCTGAAGAACGCAGTCCAAATCATCAAGATTCCAGCAGTACTCAGGTCTTATGGCAAGACAACATTGATCCTGATAATATGACTTATGAGGAATTGCTGGATTTGAGTGAGACAGTTGGAACTCAAAGCAGAGGCCTTTCCCAAGAACTTATCAATTTGCTTCCAACCTCAAAGAACAAATTTGGAAGCTTGTTTACCAGAAAAAGTTCTGCGAAAAGGTGCGTGATTTGTCAAATGACATATAAGAGAGGCGACCGGCAAATGAAATTGCCATGCAGGCATGTTTACCATTGTGAATGCATCAGTAAGTGGCTTAGCATCAATAAGAAATGCCCAATTTGCAACGCTGAGGTGTTTGGTGAGGAATCAAAGCATTAG 930 0.4226 MRCETFVLCLVTENPRKLQARNVRKWPLLVLTSCAFLVRIVEATTDHIRLNSEELDRLFLIYCFKMNDNRQMEVHFIDTGFPYTVTESFMDFFEGLTHVPVNYGHAAPMPDQESVYWSMNMNPYKYGMSGPLSPSYFGFLEPLRSPIREVNRGEWEYPSTMTTEETATTDTSSRRDGVTGMQTIPEERSPNHQDSSSTQVLWQDNIDPDNMTYEELLDLSETVGTQSRGLSQELINLLPTSKNKFGSLFTRKSSAKRCVICQMTYKRGDRQMKLPCRHVYHCECISKWLSINKKCPICNAEVFGEESKH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2006 309 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 69 305 IPR033276 GO:0004842|GO:0016567|GO:0046621
Glsi04g2006 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 303 IPR013083 -
Glsi04g2006 309 ProSiteProfiles Zinc finger RING-type profile. 258 299 IPR001841 -
Glsi04g2006 309 Pfam Ring finger domain 257 299 IPR001841 -
Glsi04g2006 309 SUPERFAMILY RING/U-box 257 303 - -
Glsi04g2006 309 FunFam E3 ubiquitin ligase BIG BROTHER 220 303 - -
Glsi04g2006 309 SMART ring_2 258 298 IPR001841 -
Glsi04g2006 309 MobiDBLite consensus disorder prediction 160 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2006 Glsi-ChrGlsi04 70236248 70241351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2006 68 309 C3H Transcription Factor Family AT3G63530 53.469 6.70e-90 266