Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2002 ATGGCATTGTGTGGTCGAATCAGATCAGGCATCTCTCTCATCAATAAATTAACGTATCTTGGTTCCGATTCTCTCTCTGCCCGGACATCCACACTTCACCGATCCCTAATTGCCCCTCTCACGTCCCAGGACTCTAGAAATTATGCCACTAAATCAGCGCAAAAGGAACTGAAAGTAAAGGTGCCTTTGGCTTTGTTTGGGGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCAGCAGTGAAAGTTAATGCATTGGAAAAGGTTGAGTCTGAGATTCTTGACCTTGTAGAGGCGACAAAGAAAAGTCCTAAATTTTCACAGTTTACGAAGGACTTGTCGCTGCCTAAAGATACTAGAATAAAGGCCATCCAAGAAATTTGTGGTGAAGCTAAATTTTCAGATATTACGAAAAACTTCCTTGTTGTCTTGGCTGAGAATGGGAGGCTAAGAAACTTAGACAGCATAGTAAAGAGGTTTGTGGAGTTGACTATGGCACATAAGGGAGAAGTGAAAGCCACTGTGACCACTGTCATCCCACTTCCCCCTGCAGAAGAGCAGCAACTGAAGGAGACTCTTCAGGAGATCATAGGTGCAGGGAAGACGGTTAAGCTTGAACAGAAGATTGATCCAAGCATACTTGGTGGTTTAGTGGTGGAATTTAGCCAGAGGGTCCTTGACATGTCAATTAAGACTAGGGCACGTCAGATGGAGAGGGCCCTCCGAGAGCCCATAAATATTGCCAACATCTAG 753 0.4449 MALCGRIRSGISLINKLTYLGSDSLSARTSTLHRSLIAPLTSQDSRNYATKSAQKELKVKVPLALFGGSGNYASALYIAAVKVNALEKVESEILDLVEATKKSPKFSQFTKDLSLPKDTRIKAIQEICGEAKFSDITKNFLVVLAENGRLRNLDSIVKRFVELTMAHKGEVKATVTTVIPLPPAEEQQLKETLQEIIGAGKTVKLEQKIDPSILGGLVVEFSQRVLDMSIKTRARQMERALREPINIANI 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2002 250 Pfam ATP synthase delta (OSCP) subunit 70 241 IPR000711 GO:0015986|GO:0046933
Glsi04g2002 250 NCBIfam ATP synthase F1 subunit delta 71 241 IPR000711 GO:0015986|GO:0046933
Glsi04g2002 250 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 203 222 IPR020781 GO:0015986|GO:0016020|GO:0046933
Glsi04g2002 250 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 69 170 IPR026015 -
Glsi04g2002 250 PRINTS ATP synthase delta subunit signature 201 216 IPR000711 GO:0015986|GO:0046933
Glsi04g2002 250 PRINTS ATP synthase delta subunit signature 68 87 IPR000711 GO:0015986|GO:0046933
Glsi04g2002 250 PRINTS ATP synthase delta subunit signature 138 149 IPR000711 GO:0015986|GO:0046933
Glsi04g2002 250 PRINTS ATP synthase delta subunit signature 216 234 IPR000711 GO:0015986|GO:0046933
Glsi04g2002 250 PRINTS ATP synthase delta subunit signature 149 163 IPR000711 GO:0015986|GO:0046933
Glsi04g2002 250 PANTHER ATP SYNTHASE DELTA CHAIN 43 243 IPR000711 GO:0015986|GO:0046933
Glsi04g2002 250 Hamap ATP synthase subunit delta [atpD]. 64 243 IPR000711 GO:0015986|GO:0046933
Glsi04g2002 250 Gene3D - 68 161 IPR026015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2002 Glsi-ChrGlsi04 70123140 70133824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2002 3 250 Primary Pumps ATPases AT5G13450 47.177 4.20e-70 212