LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g2001	ATGAAGAATAATAGCAAGCTAAGGAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTGATAAGGTACATGTTAACTAATGGACAAGGGTGCTGGAGTGACATTGCCAGGAATGCTGGCCTCCAAAGGTGTGGCAAAAGTTGCCGTCTTCGCTGGATCAATTACTTGAGACCTGACCTTAAACGAGGTGCATTTTCTCCCCAAGAGGAACACCTCATCGTTCATTTCCATTCCATTCTTGGCAACAGGTGGTCTCAAATCGCAGCACGTCTTCCTGGACGAACAGACAACGAGATTAAAAATTTCTGGAACTCTACATTGAAGAAAAGGTTGAAAAACAACACTAATTCATCACAAAACAACAGCAACTCATCACCATCAGAGCCCAGAGGTCATCCTCATCATGTTATGAATGGGAATAATATTAATGGGATCATGCCCATTAATGATAATCATGACCTCATGACCATGTGCATGGATTCCTCCTCATCTTCATCTTCATCATCTTCATCATCCATGCAACCACCTCCTATGGTTTTTGGGGACCAATTATTGGATCCCTTTTCCATGTTTAACGTTGGAGCTGGTTTTTCTGACATGCCTGCATGTTTCTCCCAAGTTGTTGGCATGGCAAATTACGATGGGATGTTACTAGAGGCTAATAAGATGAACATGGGGTTAGAAAGAGACCTCTCTCTCCCTCCTCTAGAAACTAGAAGAAGCAATCTTGAAGAAGAAAACAGTTTCCCCTTACTTGATGTGAAAAGCCACCCCAACCACTTCAATAATAGTTGCTTCAATAACACTAATAATCAGATTAATATTCAGAGCTCTAAAGTAGAAGACTCGCTTGGGTTTGGAAATAATGGGCAAGGAGAACAAAACTCATTGGGAGAATGGGATTTGGAAGGTTTGATGCAAGATTTATCTTCTTTTCCTTTCCTTGATTTCCAAGCTGATTAA	963	0.4143	MKNNSKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEHLIVHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKNNTNSSQNNSNSSPSEPRGHPHHVMNGNNINGIMPINDNHDLMTMCMDSSSSSSSSSSSSMQPPPMVFGDQLLDPFSMFNVGAGFSDMPACFSQVVGMANYDGMLLEANKMNMGLERDLSLPPLETRRSNLEEENSFPLLDVKSHPNHFNNSCFNNTNNQINIQSSKVEDSLGFGNNGQGEQNSLGEWDLEGLMQDLSSFPFLDFQAD	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g2001	320	FunFam	MYB transcription factor	6	62	-	-
	Glsi04g2001	320	ProSiteProfiles	Myb-like domain profile.	57	107	IPR001005	-
	Glsi04g2001	320	Gene3D	-	63	131	-	-
	Glsi04g2001	320	CDD	SANT	64	107	IPR001005	-
	Glsi04g2001	320	PANTHER	MYB DOMAIN PROTEIN 55	2	274	-	-
	Glsi04g2001	320	SMART	sant	8	58	IPR001005	-
	Glsi04g2001	320	SMART	sant	61	109	IPR001005	-
	Glsi04g2001	320	MobiDBLite	consensus disorder prediction	156	179	-	-
	Glsi04g2001	320	Gene3D	-	6	62	-	-
	Glsi04g2001	320	ProSiteProfiles	Myb-like domain profile.	4	56	IPR001005	-
	Glsi04g2001	320	CDD	SANT	12	56	IPR001005	-
	Glsi04g2001	320	Pfam	Myb-like DNA-binding domain	12	71	-	-
	Glsi04g2001	320	MobiDBLite	consensus disorder prediction	156	177	-	-
	Glsi04g2001	320	FunFam	Transcription factor MYB46	63	132	-	-
	Glsi04g2001	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	57	111	IPR017930	-
	Glsi04g2001	320	MobiDBLite	consensus disorder prediction	111	129	-	-
	Glsi04g2001	320	MobiDBLite	consensus disorder prediction	111	144	-	-
	Glsi04g2001	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	4	56	IPR017930	-
	Glsi04g2001	320	SUPERFAMILY	Homeodomain-like	7	103	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g2001	Glsi-ChrGlsi04	70116802	70118728	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g2001	3	320	MYB Transcription Factor Family	AT3G08500	49.848	8.91e-85	257

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi04g2001		Myb_DNA-bind_6	7.7e-14	CL0123