Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1997 ATGATAATCGATAAATCAAAATCTCCTTCAACTCCATCGTCATCTGCTGTAGAAGGTGCAACTGACATCAAAGACATGAAAAACCTAACTGTTCATACGGAAGATTCTTTTTCCAACTTACTGGAACTTGCTTCTAACAATGATGTTGAAGGCTTTAAGCTACTGTTAGATAGGGATGCTTCTTCGATCAATGAAGTTGGGCTTTGGTACTGTCGCCAAATTGGATCAAAACAAATTGTTCTTGAGGATAGAACTCCTTTAATGGTTGCTGCTACCTATGGTAGTATTGATGTTCTGAAGTTTATACTCTCATATGCGGAAGCTGATGTTAATTTCTCCTGTGGGATGAGTAAAAGCACTGCCCTTCATTGTGCTGCATCTGGTGGCTCTATTAATGCAGTTGATGCTGTGAAACTTCTTTTAGCAGCTGGTGCTGATCTCAATTGCACGGATGCCAGTGGAAATCGTCCTGTTGATATTATTGTTGTTCCTCCCAAGCTGCAAGGCATGAAAGCAATACTGGAGGAACTTCTTTCTGATAATTCATCTGATGGCTCTGTTGGTGACTGCTCTATTCCAGCATCTGTGAATTCATCTAGCCCTGGTTTGCCTGCCCATTTATTATCCCCTGAGAATGGGTTGTCATCTCCTGTAGGCTCACCAAGATCTCCAGTGGCTTCAAAGTTTACTGACGCACCTGTTAATTCTACCTCAGAGAAGAAAGAGTATCCAATTGATCCATCACTTCCCGATATTAAAAACAGCATATATGCAACAGATGAGTTTCGCATGTTCTCATTCAAGGTTCGTCCTTGTTCCCGTGCATACTCTCATGACTGGACTGAGTGTCCTTTTGTTCATCCAGGAGAGAATGCTCGTAGGAGAGACCCCAGGAAGTTCCATTACAGCTGTGTACCTTGCCCTGATTTTCAGAAGGGGGCTTGTAGGCGAGGGGATATGTGTGAATATGCTCATGGTGTATTTGAATGCTGGCTACACCCAGCCCAGTATCGGACACGGCTCTGCAAAGATGGTATAAGCTGCAATAGACGGGTTTGTTTTTTTGCCCACACAGCAGAAGAGTTGCGTCCACTGTATGTGTCCACTGGATCTGCTGTCCCTTCTCCACGTGCATCTGTCTCTTCTCCCAATGTCATGGATATGGCTGCTGCAGTGAGCCTATTGCCAGGTTCTCTTTCATCTGTGTCTTCCATGTCTCCATCCCCATTTGCCCAGCCGATGTCGCCATCTGCAAATGGCATCTCTCACTCATCTGCCTGGCCACAGCCCAATGTGCCAGCCCTTCACCTACCTGGCAGTAATCTTCAATCTAGTCGCTTGAGATCTTCTCTTAGTGCTAGAGACATGCCAGCTCAAGACTTGAACATGCTGCCAGATTTTGATGGCCAGCAACACCTCATGAATGATCTGGGCTGTTTCTCACAGCCCCGTCCTAGTGCTGTTGCTGGGAACCGTTGTGGTCGGTCTAAGACACTAACTCCATCTAATCTTGAAGAACTCTTTTCTAACGAAATTTCTTCATCTCCCCGGTACCCTGATCAAGCAGCTTCTGTTTTTTCCCCAACACACAGATCGGCTGTTCTCAATCAGTTTCAACAACTTCAGAGTATGTTATCACCCATAAATACAAATGTTTTGTCTCCTAAGAATGTTGAGCATCCTCTGTTACAGGCTTCATTTGGTGTATCTTCTCCTGGAAGGATGTCACCAAGAAGTGTGGAGCCAATATCTCCTCATAGTTCTCGTTTATCTCCATTTGCTCAGCGTGAGAAACAGCAGCAGCAACAGCTGCGGAGCCTTAGTTCTAGGGACCTTGGTTCCAAAAATCCTGCCTCGGCTGTTGGGTCTCCTGTAAACTCATGGTCTAATTGGGGATCTCCCAATGGAAAAGTTGACTGGTCTGTAAATGGAGATGAACTAGGTCGGTTGAGAAAGTTGTCTTCATTTGAACTTGGGAACAACGGGGAAGAGCCTGATCTATCTTGGGTCCAATCCCTTGTCAAGGAATCCCCACCTGAGATCATCAAAGAGAAGTTGGCATCCTCTGGCCCCATTGCATCTGCTGATAAACTAAATTCCATTTCTCAAATTGAATCCATTGATAATTCTGTTATAGGAGCTTGGCTCGAGCAAATGCAGCTGGATCAACTCGCAGTCTAG 2181 0.4516 MIIDKSKSPSTPSSSAVEGATDIKDMKNLTVHTEDSFSNLLELASNNDVEGFKLLLDRDASSINEVGLWYCRQIGSKQIVLEDRTPLMVAATYGSIDVLKFILSYAEADVNFSCGMSKSTALHCAASGGSINAVDAVKLLLAAGADLNCTDASGNRPVDIIVVPPKLQGMKAILEELLSDNSSDGSVGDCSIPASVNSSSPGLPAHLLSPENGLSSPVGSPRSPVASKFTDAPVNSTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFQKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGISCNRRVCFFAHTAEELRPLYVSTGSAVPSPRASVSSPNVMDMAAAVSLLPGSLSSVSSMSPSPFAQPMSPSANGISHSSAWPQPNVPALHLPGSNLQSSRLRSSLSARDMPAQDLNMLPDFDGQQHLMNDLGCFSQPRPSAVAGNRCGRSKTLTPSNLEELFSNEISSSPRYPDQAASVFSPTHRSAVLNQFQQLQSMLSPINTNVLSPKNVEHPLLQASFGVSSPGRMSPRSVEPISPHSSRLSPFAQREKQQQQQLRSLSSRDLGSKNPASAVGSPVNSWSNWGSPNGKVDWSVNGDELGRLRKLSSFELGNNGEEPDLSWVQSLVKESPPEIIKEKLASSGPIASADKLNSISQIESIDNSVIGAWLEQMQLDQLAV 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1997 726 PANTHER UNKEMPT FAMILY MEMBER 42 677 IPR045234 -
Glsi04g1997 726 SMART c3hfinal6 336 359 IPR000571 GO:0046872
Glsi04g1997 726 SMART c3hfinal6 301 327 IPR000571 GO:0046872
Glsi04g1997 726 MobiDBLite consensus disorder prediction 581 630 - -
Glsi04g1997 726 Pfam Ankyrin repeats (3 copies) 44 151 IPR002110 GO:0005515
Glsi04g1997 726 ProSiteProfiles Ankyrin repeat profile. 117 152 IPR002110 GO:0005515
Glsi04g1997 726 SMART ANK_2a 117 149 IPR002110 GO:0005515
Glsi04g1997 726 SMART ANK_2a 35 65 IPR002110 GO:0005515
Glsi04g1997 726 SMART ANK_2a 82 112 IPR002110 GO:0005515
Glsi04g1997 726 Gene3D - 21 195 IPR036770 -
Glsi04g1997 726 PRINTS Ankyrin repeat signature 83 98 IPR002110 GO:0005515
Glsi04g1997 726 PRINTS Ankyrin repeat signature 136 150 IPR002110 GO:0005515
Glsi04g1997 726 MobiDBLite consensus disorder prediction 410 430 - -
Glsi04g1997 726 MobiDBLite consensus disorder prediction 568 630 - -
Glsi04g1997 726 MobiDBLite consensus disorder prediction 213 237 - -
Glsi04g1997 726 ProSiteProfiles Zinc finger C3H1-type profile. 306 328 IPR000571 GO:0046872
Glsi04g1997 726 Pfam CCCH-type zinc finger 306 326 IPR041367 -
Glsi04g1997 726 FunFam Zinc finger CCCH domain-containing protein 66 259 327 - -
Glsi04g1997 726 MobiDBLite consensus disorder prediction 202 245 - -
Glsi04g1997 726 MobiDBLite consensus disorder prediction 410 429 - -
Glsi04g1997 726 Gene3D - 302 364 - -
Glsi04g1997 726 SUPERFAMILY Ankyrin repeat 32 162 IPR036770 -
Glsi04g1997 726 ProSiteProfiles Ankyrin repeat region circular profile. 117 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1997 Glsi-ChrGlsi04 69995743 69999187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1997 34 723 C2H2 Transcription Factor Family AT5G12850 55.650 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi04g1997 Ank_2 4.3e-11 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1997 04 69995743 69999187 Glsi04g1997 04 69995743 69999187 ECH