Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1993 ATGGAGTCAGAAGGGGAAGCGGGGGCAAAGCCTATGACCGTATTGGGTGGCCAAGTCTGCCAGATCTGTGGTGATAATGTTGGGAAGACTGTGGATGGTGAACCATTCATTGCATGCGCCGTATGTGCTTTTCCTGTTTGCAGGCCTTGCTATGAGTATGAAAGGAAAGATGGGAATCAGTCTTGCCCCCAGTGTAAAACCCGGTACAAGAGGCACAAAGGAAGTCCTGCAATTGTTGGAGATAGGGAAGAGGATGGCGGTGCTGATGATGGTGCTAGTGAGTTCAATTATGACTCAGAAAATCAAAGCCAAAAGCAGAAGATTTCTGAGCGCATGTTGAGCTGGCACATGACTTACGGGCGGGCAGAGGAGGTTGGTGCTCCAAATTACGATAAGGAAGTTTCTCACAACCACATTCCTCTGCTAACCAGTGGACAAGAGGTCTCTGGAGAGTTATCTGCTGCCTCACCTGAGAGAGTCTCAATGGCATCTCCTGGAATTGGTGGCGGAAAGCGTGTCCATAATCTCACATATTCATCTGATGTTAATCAATCACCAAATATTAGGGTTGTGGATTCAGGATTGGGCAATGTAGCATGGAAAGAAAGAGTCGATGGCTGGAAGATGAAGCAAGAAAAGAATGTTGTTCCAATGAGCACAGGCCAGGCTGCTTCTGAAAGAGGAGCTGGAGATATTGATGCTACAACTGATGTGCTTGTGGATGATTCCTTGTTGAATGATGAAGGTCGACAACCTCTTTCCAGGAAGGTTTCTGTTCCATCATCTAGGATAAATCCATACCGTATGGTCATTGTTCTGCGGCTGGTTATCCTCTGCATTTTCTTGCATTACCGAATAACAAATCCTGTGCCCAATGCATATGCATTGTGGTTGATATCAGTCATATGTGAGATTTGGTTTGCCATATCTTGGATACTGGATCAGTTCCCTAAGTGGCTCCCTGTAAACCGTGAAACATATCTTGACAGGCTAGCACTCAGGTATGATCAGGAAGGAGAACCCTCACAGCTAGCGGCTGTTGACATTTTTGTCAGTACTGTTGACCCATTAAAGGAGCCCCCACTTGTGACTGCCAATACTGTGCTATCTATTCTTGCTGTTGATTACCCAGTCGATAAGGTCTCCTGCTATGTATCTGATGATGGTGCTGCTATGTTGACATTTGAAGCTCTGGCTGAGACATCAGAGTTTTCTAGGAAATGGGTTCCTTTCTGCAAGAAATTTAACATTGAACCCCGAGCACCAGAGTGGTACTTTGCACAGAAGATTGACTACTTGAAGGATAAGGTTCAACCATCATTTGCGAAAGAACGTAGAGCCATGAAGAGAGAATATGAAGAATTCAAAGTTCGTATCAATGGACTTGTTTCAAAGGCACAGAAAGTTCCTGAAGAAGGATGGGTAATGCAAGATGGTACACCATGGCCAGGAAACAACACTAGAGACCATCCGGGAATGATCCAGGTTTTTTTGGGCCAAAGTGGAGGACTTGACACTGAGGGTAATGAACTACCACGCTTAGTCTATGTTTCTCGTGAAAAGCGTCCAGGGTTCCAACATCACAAGAAGGCCGGTGCCATGAATGCATTGGTTCGAGTATCGGCTGTTCTTACCAACGGGCCTTTCTTGTTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCCTTGAGAGAAGCTATGTGTTTTATGATGGATCCCAACCTTGGAAAGCATGTTTGCTATGTCCAGTTTCCACAGAGGTTTGATGGTATTGATAGGAATGATCGATATGCCAATCGTAATACCGTTTTCTTTGATATAAACTTGAGAGGTTTGGATGGAATTCAAGGACCAGTTTATGTGGGTACTGGATGTGTCTTCAATAGAACTGCTTTATATGGTTATGAACCTCCTATTAAACCCAAGCATAAAAAACCTGGGTTGCTATCTTCACTCTGTGGTGGAAATCGAAAGAAGAGTTCAAAATCTAGTAAGAAAGGCTCAGATAAGAAAAAATCTAGCAAGCATGTTGACCCAACTGTGCCCATCTTCAGTCTAGAGGATATAGAAGAAGGGGTTGAAGGTACTGGATTTGATGATGAGAAGTCACTACTTATGTCACAAATGAGCCTTGAGAAAAGGTTTGGTCAGTCTGCTGTTTTTGTTGCATCTACTCTCATGGAGAATGGTGGTGTTCCTCAGTCTGCTACTCCAGAGACTCTTCTTAAGGAGGCTATTCATGTTATCAGCTGTGGTTATGAGGACAAAACAGAATGGGGAAGTGAGATAGGATGGATCTATGGTTCTGTCACAGAAGATATTCTTACTGGATTTAAGATGCATGCCCGGGGTTGGCGGTCTGTTTACTGCATGCCTAAGCTCGCAGCATTTAAAGGTTCTGCTCCTATCAATCTTTCAGATCGTCTGAACCAAGTGCTTCGATGGGCTTTAGGTTCTGTGGAAATTCTCTTAAGTCGACACTGTCCCATCTGGTATGGTTATAGCGGAAGGCTGAAATGGCTTGAGAGATTCTCATATATTAACACTACGATCTATCCGATCACCTCCATTCCCCTCCTCATGTATTGTACCTTGCCTGCTGTCTGTCTCCTCACAAACAAGTTCATTATTCCACAGATTAGTAACATTGCAAGTATATGGTTTATATCTCTCTTTCTTTCCATCTTCGCAACCGGTATCCTCGAGATGAGGTGGAGTGGTGTAGGCATTGACGAGTGGTGGAGGAATGAACAATTTTGGGTTATTGGTGGTGTTTCAGCCCATCTTTTTGCTGTGTTCCAAGGCTTGCTCAAAGTTCTTGCAGGAATTGACACCAACTTCACTGTTACCTCCAAGGCATCAGATGAAGATGGAGACTTTACAGAACTCTACATGTTCAAATGGACAACCCTTCTCATTCCACCCACAACTCTCCTCATCATAAACTTGGTGGGGGTCGTTGCTGGAATCTCTTACGCCATTAACAGTGGTTACCAATCATGGGGTCCCCTCTTTGGTAAGCTTTTCTTTGCATTTTGGGTGATCATCCATCTCTACCCCTTCCTCAAAGGTCTCATGGGAAGGCAGAACCGAACACCAACCATTGTCGTGGTCTGGTCCATTCTACTTGCATCTATCTTCTCTCTATTGTGGGTCCGAATTGACCCATTTACAACACGAGTCACTGGTCCAGATGTTGAGCAGTGTGGAATTAACTGCTAG 3228 0.4436 MESEGEAGAKPMTVLGGQVCQICGDNVGKTVDGEPFIACAVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAIVGDREEDGGADDGASEFNYDSENQSQKQKISERMLSWHMTYGRAEEVGAPNYDKEVSHNHIPLLTSGQEVSGELSAASPERVSMASPGIGGGKRVHNLTYSSDVNQSPNIRVVDSGLGNVAWKERVDGWKMKQEKNVVPMSTGQAASERGAGDIDATTDVLVDDSLLNDEGRQPLSRKVSVPSSRINPYRMVIVLRLVILCIFLHYRITNPVPNAYALWLISVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDQEGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALAETSEFSRKWVPFCKKFNIEPRAPEWYFAQKIDYLKDKVQPSFAKERRAMKREYEEFKVRINGLVSKAQKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGLLSSLCGGNRKKSSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGTGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSVYCMPKLAAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYSGRLKWLERFSYINTTIYPITSIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1993 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
Glsi04g1993 1075 FunFam Cellulose synthase 3 94 - -
Glsi04g1993 1075 SUPERFAMILY Nucleotide-diphospho-sugar transferases 361 888 IPR029044 -
Glsi04g1993 1075 MobiDBLite consensus disorder prediction 74 108 - -
Glsi04g1993 1075 SUPERFAMILY RING/U-box 5 87 - -
Glsi04g1993 1075 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 251 1042 - -
Glsi04g1993 1075 Pfam Cellulose synthase 347 1068 IPR005150 GO:0016020|GO:0016760|GO:0030244
Glsi04g1993 1075 CDD mRING-HC-C4C4_CesA 18 68 - -
Glsi04g1993 1075 MobiDBLite consensus disorder prediction 647 679 - -
Glsi04g1993 1075 ProSiteProfiles Zinc finger RING-type profile. 20 66 IPR001841 -
Glsi04g1993 1075 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 474 638 IPR029044 -
Glsi04g1993 1075 FunFam Cellulose synthase 464 638 - -
Glsi04g1993 1075 Pfam Zinc-binding RING-finger 10 85 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1993 Glsi-ChrGlsi04 69947071 69954413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1993 1 1075 Glycosyltransferase AT5G05170 86.803 0.0 1937