Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi04g1991 | ATGGAGTTTTTGTTCTGTTGTACAGCTTGTATAGCATTACGTTTTTCACATTTGTATTGTCATGAGAAGAAACTGCTTGACAGCTTTGGACAGTGGGATCCAAAACAAATGATTGACACACATCAAGCTCTCATCAAAACCATCAACATTCTTGAGTCTTCACAAACAAGAAAATGCCATTTGAAGTCATTAGGATGCTGTGGTAGACTCATACTACAAGCATACATTTCTCTTTTGGGGAAAACTAGCGTAAGATGCCAGGAAAACCTGAAGTTGAAGATTGGAGGTTTGAACGTTGAGAGCATATTCAGTTGCAATCAGCCATGTGGAACTGTTGGCAAAGAGTACCAAAGCACCAAACATGTTTTGTCCTCGACACCTCCTACCTCGGGCAAACACCTTGGTCCAAATTCCCATATGGAACTTTATAGTCATTCAATTGTTTTGACCTCTTACCCTTACTCAGATGCACATTATGCTGGAATCTTGACTTCTCATGGGCCTCAAACTATGATAACTCCTCAGTTGTATGGAATGCACCGTGCTAGAATGCCTTTGCCACTCGATATGGAAGAGGAGCCTGTTTACGTTAATGCAAAGCAGTATCATGGAATTTTGAGGCGAAGGCAGTCACGTGCCAAGGCTGAGCTTGAAAAGAAATTGATCAAAGTTAGAAAGGCTGTGGAAAATTATTCACTTCATCATGGCCTACAGGCTGATGATATTAGTTCCGTTCTCATGGTTTCTTCGGCTATTTTTCTTTCTATTAGGTCTAGGCTGCTGTCTGATAGAAAAGACAATGGAAAACCATATCTTCACGAATCCCGCCACCTACATGCTATGAGAAGGGCAAGGGGTTGTGGGGGTCGCTTTCTCAATACAAAGAAACTTGAAAGTAACAATTCTGTCAATGTCACTCCAGAAAAAGGCAAGAATACTGGTGCAAACCCCTTAGCAAAATCCGGCAGCTCACGCACCTCTGAATGTTTGCTTCCCCACAATGAGAATTTACACTCATCAAATGATCAGCATGATATATCCATATCCATGGTTCGGAACATGCACAAAGCACATGGTCTCTCCATTGGTTACGATGATGTCAATGAGATTTCATCACAATACCATTCACAGTTAAATGGCAAAAAGGAGGGAGGCTGCAGCTTTGGTCCAAATGGGGCCATCAAGTAA | 1188 | 0.4184 | MEFLFCCTACIALRFSHLYCHEKKLLDSFGQWDPKQMIDTHQALIKTINILESSQTRKCHLKSLGCCGRLILQAYISLLGKTSVRCQENLKLKIGGLNVESIFSCNQPCGTVGKEYQSTKHVLSSTPPTSGKHLGPNSHMELYSHSIVLTSYPYSDAHYAGILTSHGPQTMITPQLYGMHRARMPLPLDMEEEPVYVNAKQYHGILRRRQSRAKAELEKKLIKVRKAVENYSLHHGLQADDISSVLMVSSAIFLSIRSRLLSDRKDNGKPYLHESRHLHAMRRARGCGGRFLNTKKLESNNSVNVTPEKGKNTGANPLAKSGSSRTSECLLPHNENLHSSNDQHDISISMVRNMHKAHGLSIGYDDVNEISSQYHSQLNGKKEGGCSFGPNGAIK | 395 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi04g1991 | 395 | MobiDBLite | consensus disorder prediction | 375 | 395 | - | - | |
Glsi04g1991 | 395 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 265 | 291 | IPR001289 | GO:0003700|GO:0006355 | |
Glsi04g1991 | 395 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 193 | 234 | IPR001289 | GO:0003700|GO:0006355 | |
Glsi04g1991 | 395 | SMART | cbf3 | 190 | 294 | IPR001289 | GO:0003700|GO:0006355 | |
Glsi04g1991 | 395 | MobiDBLite | consensus disorder prediction | 301 | 328 | - | - | |
Glsi04g1991 | 395 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 117 | 350 | IPR001289 | GO:0003700|GO:0006355 | |
Glsi04g1991 | 395 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 196 | 216 | IPR018362 | GO:0003677|GO:0016602 | |
Glsi04g1991 | 395 | Coils | Coil | 207 | 227 | - | - | |
Glsi04g1991 | 395 | ProSiteProfiles | NF-YA/HAP2 family profile. | 191 | 294 | IPR001289 | GO:0003700|GO:0006355 | |
Glsi04g1991 | 395 | Gene3D | - | 191 | 296 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi04g1991 | Glsi-ChrGlsi04 | 69912063 | 69922790 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi04g1991 | 144 | 327 | CCAAT-HAP2 Transcription Factor Family | AT1G30500 | 41.081 | 1.60e-32 | 119 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YA | Glsi04g1991 | CBFB_NFYA | 3e-11 | No_clan |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Glsi04g1991 | 04 | 69912063 | 69922790 | Glsi04g1991 | 04 | 69912063 | 69922790 | ECH |