Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1991 ATGGAGTTTTTGTTCTGTTGTACAGCTTGTATAGCATTACGTTTTTCACATTTGTATTGTCATGAGAAGAAACTGCTTGACAGCTTTGGACAGTGGGATCCAAAACAAATGATTGACACACATCAAGCTCTCATCAAAACCATCAACATTCTTGAGTCTTCACAAACAAGAAAATGCCATTTGAAGTCATTAGGATGCTGTGGTAGACTCATACTACAAGCATACATTTCTCTTTTGGGGAAAACTAGCGTAAGATGCCAGGAAAACCTGAAGTTGAAGATTGGAGGTTTGAACGTTGAGAGCATATTCAGTTGCAATCAGCCATGTGGAACTGTTGGCAAAGAGTACCAAAGCACCAAACATGTTTTGTCCTCGACACCTCCTACCTCGGGCAAACACCTTGGTCCAAATTCCCATATGGAACTTTATAGTCATTCAATTGTTTTGACCTCTTACCCTTACTCAGATGCACATTATGCTGGAATCTTGACTTCTCATGGGCCTCAAACTATGATAACTCCTCAGTTGTATGGAATGCACCGTGCTAGAATGCCTTTGCCACTCGATATGGAAGAGGAGCCTGTTTACGTTAATGCAAAGCAGTATCATGGAATTTTGAGGCGAAGGCAGTCACGTGCCAAGGCTGAGCTTGAAAAGAAATTGATCAAAGTTAGAAAGGCTGTGGAAAATTATTCACTTCATCATGGCCTACAGGCTGATGATATTAGTTCCGTTCTCATGGTTTCTTCGGCTATTTTTCTTTCTATTAGGTCTAGGCTGCTGTCTGATAGAAAAGACAATGGAAAACCATATCTTCACGAATCCCGCCACCTACATGCTATGAGAAGGGCAAGGGGTTGTGGGGGTCGCTTTCTCAATACAAAGAAACTTGAAAGTAACAATTCTGTCAATGTCACTCCAGAAAAAGGCAAGAATACTGGTGCAAACCCCTTAGCAAAATCCGGCAGCTCACGCACCTCTGAATGTTTGCTTCCCCACAATGAGAATTTACACTCATCAAATGATCAGCATGATATATCCATATCCATGGTTCGGAACATGCACAAAGCACATGGTCTCTCCATTGGTTACGATGATGTCAATGAGATTTCATCACAATACCATTCACAGTTAAATGGCAAAAAGGAGGGAGGCTGCAGCTTTGGTCCAAATGGGGCCATCAAGTAA 1188 0.4184 MEFLFCCTACIALRFSHLYCHEKKLLDSFGQWDPKQMIDTHQALIKTINILESSQTRKCHLKSLGCCGRLILQAYISLLGKTSVRCQENLKLKIGGLNVESIFSCNQPCGTVGKEYQSTKHVLSSTPPTSGKHLGPNSHMELYSHSIVLTSYPYSDAHYAGILTSHGPQTMITPQLYGMHRARMPLPLDMEEEPVYVNAKQYHGILRRRQSRAKAELEKKLIKVRKAVENYSLHHGLQADDISSVLMVSSAIFLSIRSRLLSDRKDNGKPYLHESRHLHAMRRARGCGGRFLNTKKLESNNSVNVTPEKGKNTGANPLAKSGSSRTSECLLPHNENLHSSNDQHDISISMVRNMHKAHGLSIGYDDVNEISSQYHSQLNGKKEGGCSFGPNGAIK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1991 395 MobiDBLite consensus disorder prediction 375 395 - -
Glsi04g1991 395 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 265 291 IPR001289 GO:0003700|GO:0006355
Glsi04g1991 395 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 193 234 IPR001289 GO:0003700|GO:0006355
Glsi04g1991 395 SMART cbf3 190 294 IPR001289 GO:0003700|GO:0006355
Glsi04g1991 395 MobiDBLite consensus disorder prediction 301 328 - -
Glsi04g1991 395 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 117 350 IPR001289 GO:0003700|GO:0006355
Glsi04g1991 395 ProSitePatterns NF-YA/HAP2 subunit signature. 196 216 IPR018362 GO:0003677|GO:0016602
Glsi04g1991 395 Coils Coil 207 227 - -
Glsi04g1991 395 ProSiteProfiles NF-YA/HAP2 family profile. 191 294 IPR001289 GO:0003700|GO:0006355
Glsi04g1991 395 Gene3D - 191 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1991 Glsi-ChrGlsi04 69912063 69922790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1991 144 327 CCAAT-HAP2 Transcription Factor Family AT1G30500 41.081 1.60e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi04g1991 CBFB_NFYA 3e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1991 04 69912063 69922790 Glsi04g1991 04 69912063 69922790 ECH