Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1972 ATGGAGGAAGTTCAGGAGCCTCAAACTCAAACTCTCGGTCAAGATAATCAAAACGAAGTCGTTACTGAAAGTTCTGCGTTTGTTAAAGGGGAACCTCCACAAGAAGATAGCAATCCCCCTAAAGTTGACTCTGAGGTTGAAATCCTTCATGAAAATGTCACAAAACAAATAATTAAGGAAGGTCATGGTCAGAAACCTTCCAAATATTCAACATGCTTTTTTCACTACAGGGCATGGACTGAAAGCACCCAGCACAAGTTTGAAGACACATGGAATGAGCGAGGACCAGTTGAAATGGTATTAGGAAAAGAGAAAAAGGAAATGACTGGCTTGGGTATTGGTGTGGCCTCCATGAAAGCTGGAGAGTGCGCCTTACTACGGGTGGGCTGGGAATTAGGATATGGAAAGGAAGGAAGCTTTTCTTTTCCAAATGTTCCACCCATGGCAGATATAGTTTATGAAGTTGAGCTTATAGGCTTTGATGAAACAAAAGAAGGCAAAGCACGTAGTGATATGACTGTGGAGGAAAGAATTGGTGCAGCAGATAGGAGAAAGATGGATGGAAATGCTTTGTTTAAGGAAGAAAAACTGGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGAGAAGTATAGAGATATGGCATTGGCTGTAAAGAATCCATGCCACCTTAACATGGCAGCATGTTTTATAAAGCTGAATCGTTATGAAGAAGCCATAGGACAATGTAGCCTTGTATTGGGTGAGGATGAAAACAATGTCAAGGCATTATTTAGACGAGGTAAGGCTAGGGCAGCACTTGGGCAAACAGATGCTGCCAGGGAGGATTTTCTGAAAGCAAGGAACTATGCCCCTGAAGATAAAGCAATTGCAAAAGAATTGCGGTTGCTTGCTGAACATGACAAGGCTCTTTATCAAAAGCAAAGAGAGATATACAAAGGAATATTTGGACCAAGGCCTGAACCAAAACCTGAGCATAGAAATTGGCTGATTCTTATTTGGCAGTGGTTGCTGTCACTATTTTATCGGCTATTCAAGCGTGAAATGCAAAAATCTGACTAA 1098 0.4153 MEEVQEPQTQTLGQDNQNEVVTESSAFVKGEPPQEDSNPPKVDSEVEILHENVTKQIIKEGHGQKPSKYSTCFFHYRAWTESTQHKFEDTWNERGPVEMVLGKEKKEMTGLGIGVASMKAGECALLRVGWELGYGKEGSFSFPNVPPMADIVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFEKYRDMALAVKNPCHLNMAACFIKLNRYEEAIGQCSLVLGEDENNVKALFRRGKARAALGQTDAAREDFLKARNYAPEDKAIAKELRLLAEHDKALYQKQREIYKGIFGPRPEPKPEHRNWLILIWQWLLSLFYRLFKREMQKSD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1972 365 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 95 336 IPR039663 -
Glsi04g1972 365 SMART tpr_5 181 214 IPR019734 GO:0005515
Glsi04g1972 365 SMART tpr_5 266 299 IPR019734 GO:0005515
Glsi04g1972 365 SMART tpr_5 232 265 IPR019734 GO:0005515
Glsi04g1972 365 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 65 158 IPR001179 GO:0003755
Glsi04g1972 365 Gene3D Tetratricopeptide repeat domain 163 294 IPR011990 GO:0005515
Glsi04g1972 365 MobiDBLite consensus disorder prediction 1 43 - -
Glsi04g1972 365 SUPERFAMILY FKBP-like 42 167 - -
Glsi04g1972 365 Gene3D - 37 162 IPR046357 GO:0003755
Glsi04g1972 365 ProSiteProfiles TPR repeat profile. 266 299 IPR019734 GO:0005515
Glsi04g1972 365 SUPERFAMILY TPR-like 173 314 IPR011990 GO:0005515
Glsi04g1972 365 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 69 161 IPR001179 GO:0003755
Glsi04g1972 365 MobiDBLite consensus disorder prediction 1 24 - -
Glsi04g1972 365 FunFam Peptidylprolyl isomerase 166 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1972 Glsi-ChrGlsi04 69632698 69636966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1972 53 334 Calmodulin-binding Proteins AT5G48570 32.867 1.83e-31 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1972 04 69632698 69636966 Glsi04g1972 04 69632698 69636966 ECH