Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1970 ATGAAGAGGCTGAGGTCCAGCGACGATCTCCATTCTTACGGAGACAAAAATGTCTGCAAGGATTCGAATCTGAATCGGTCGTCGTCTTCTTCACACCGAAGCTTTTACTACAAAGCCGATAATGTACGGAAGGGATTGCTTTCTTCATCGTCTTCGTCGTCTCGGTATGACAGGGATCGATCGTTGGATGAGGATCGGGAGGTTTCGAGGTTGGTTCGGAAGCGATCAGACCATGACTTTGAGAGTTTTGATCGGAGAAAGGGGTTTGATCGTTATAGGGACATTGGGGATAGTAGAGGTTATGGGGCTGGAGGAGATAGGAGTTTGATTCAGAGGTCGGAGAGTTTTTGTGGGTCTAGGAGGGATTTTCCCAAGGGCTTTCGATCTGAGAGAGACCGGTCACGGCGGGAGGGCAGTGTGTCTTCGTGGCGGAGGTTTGGTGGCGGCATAAAGGATTTTGATGACAATGGTAGAGGAAGTAGGGTTGGACTGGAAGATAGAGGAGTGCGGTCGCCCAAGGGTTTGAAGGATGTAAAATCCCCGACGTGGTCAAGAGATTCTGAGAGTGAGCAGTCTAAGATGAGGTCTCCTCCAGGAGGGCTAAGAGATACGAAGTCAAAGTCGAAGTCACCAACTTGGTCCAAGGATTCAGAAAGTGAGCAGTCTAAGAGTGAGCAGTCCAAGAGTGTCGAGGTGAAGAAAACTGAGGAGTTGCAGGTTGAGAGTCGGAGTAGTAGTGAAATGGAAGAAGGAGAGCTAGAACCTGAACCTATACCTGAAACTGAACCGGAAACGGCTCCTAAAGTTCCACCTGAAAATGAAGACCAGGCCTCTATCCCAAGGGACGCAGATGACAAGGAAGTACAGATTGAATACCAGCTCAATGATGCGGATACAGCTATGCATGAAAAAGCAGAAGAACCAAATAAAGAAGAGATAAAACCAATTGAGGACATCAATTCTGGGGAAAATGACGTGGAAAAAGAAGCTGATAGGCTGTCAGATGTTCAGAATGGTCCAGCTGAGAAAATGCATGATACTGAAAATGAAATTGAAACTGTGGTTCATGATGATAACAAGGAAGAAGAGAGTTTGAAAGTCGATACTGAATGTAAGGATGAAACGAAGGAAGGTGCAGATCTGGAGAAGCCATTGTTTTGTGAAGAGGAGCATAAGTCAGACAAGGGTGTAGATCTTGAAACCAGGGTAGACTCTGACAAACCAGAGTTAAACGAGATAGTTTCAACAGAAAATGAAGTGAACAAAATAGATAGAGAAATGATGGTGGAGACAGTGACCAGCAATGCGAAGGATAAAGGCAAAAGCGTCTCTGTTACACCTTCTGATGTTGTTCATTCCTCAGAAGATGGTTTGTGGATTGATAGAGGATTGAGAGATCTCGCAACATGCTCTGATGATGCTATGGAAGGCCCAAGTACAAGGGGCTTTGAGTTGTTTTCCAGATCTCCTGTTAGGAAAGTGGAGAAAACTGACCAATCAAGTCTTAACAAGCAGAAGGATGGAAATCTTTCAATGGAGGAGCTTGATCTCTCTCTTAGCTTGCCAAATGTTTTGTTACCTATTGGTGCTCATGAGACGCTTTCAGTCCCTAGATCCCCCAGTCAAGCAAAGAGTATGCAATCTTTAAGTAATACATTTCGTACCAACTCAGAGGGGTTTACTGCATCAATGTCTTTTTCAGGTTCCCAATCATTTTATCACAATCCAAGCTGTTCTCTGACACAAAATTCATTGGACTATGAGCAATCTGTTGGCAGTCGCCCATTGTTTCAGGGAATAGATCAAGTTTCTCAAGGAGGTTGGCAAGGCCAGTCTCAGAATGATCTCAAGCAGAAAGAGATTCCTCTTTGTCAGGGAACTTTGATGAATGGAAATGGCCATTTTTGTCAGACTCAAGCATCATGGGGCATTTTGGAAGGCCAAGCTGTGAAAGGTCAACATTCTAGGGTTCTAGAAGGGAGCTCAAAAATGGCCAGTGGACTTGAGAAACAATTAAGTTTTCATAAGCAGTTGTCAGGGCAGTCAAGGCGCCATGATGATGTGAGGTCTCCTTCACAGAGTGTTGGGTCTCATGACATTGGATCAAGTTATAGTTTTGACAAGAAGAGGGAAGTGAGAGACAGGAGTACTGGTAATTTATATCGAACTACAAGCCAGAAAGAACAAGAACAATTTCAGATGGGTGGAATTGAGTTTGTTGAGACAATCATTGCAAGAATAGTTTCTGAACCAGTGCATGTAATGGCTAAAAAGTTTCATGAAATGACAGGACTATCCGCAGCATGTTTGAAGGAGAGCATACGCGAGATTATGCTTAATTCAGATAAGCGAGGGCAAATACTTGCTTTTCAGAAAATTCTGCAGAACAGGTCTGATATAACCTTGGAGGTCTTACAAATGTTCCACCGTGTTCATTTGGAAATATTGGTGGCATTGAAAACTGGTTTAACCAATTTTCTTCAGATAGACAACAACATTTCATCTTCTGATTTAGCTGAGATTTTTTTGAACTTAAGATGTAGGAATCTTCCATGTCGAAGTCAGTTGCCTGTGGATGAATGTGATTGCAAGGTTTGTGTGCAGAAAAATGGTTTTTGCAGGGAATGTATGTGTCTTGTGTGTTCTAAGTTTGACAATGCATCAAATACATGTAGTTGGGTTGGGTGCGATGTTTGTCTTCATTGGTGCCATACGGATTGTGGATTACAAGAATCTTATATTAGAAATGGGCATAGTGCATCTGGTGCACAAGGGGTGACTGAGATGCAGTTTCACTGTATTGCCTGTGGTCACCCTTCCGAGATGTTTGGCTTTGTCAAGGAGGTATTTCTGAATTTTGCACAAGGCTGGTCAGTTGAAGATCTTTGCAAGGAGCTTGAATATGTGAAGAGAATTTTTTCTGCCAGCAAGGACATGAGAGGGAGACAGTTGCATGAGATTGCTGATCAAATGCTGCTAAGGTTGGCAAATAAGTCTAAACTTAAAGAGGTTTACAGCCACATCATGTCTTTCCTTTCTGATGGTGATTCTTCTAAATTAGCCATGACGCAGAATTTTTCTGGGAGGGAACAAATTAAAGAAAACAATGGTGTAGCTGGGCCCAGCCAGGAAACTGCTTGGATGAAATCTGTTTATTCAGATAAGCCAACTCTGTTAGAAAGGCCAGCAAACATCCTTCCTAGCTATGACCGGAATGATAAACGGACTCCAGCTCAAGAGTTACAGATGACTGTCCAAAAGGACTATTGTTTTGATGAATTGGAGAGTATAGTAAAAATCAAACAGGCAGAGGCTAAAATGTTTCAATCACGTTCTGATGATGCCAGAAGAGAAGCTGAAGGGCTGAAGCGCATTGCCCTTGCAAAGAATGAGAAAATTGAAGAAGAGTATGCCAGTCGAATTTCAAAGTTGCAATTGACAGAGGCTGAGGAGCTGCGTAAACAAAAATTTGAAGAACTCCAGGCATTAGAAAGAGCACATCTGGAGTACTTCAATATGAAAATGAGAATGGAAGCAGACATTAAAGATCTGTTATTGAAAATGGAAGCTACAAAAAGGAGCCTGGCCATGTGA 3594 0.4288 MKRLRSSDDLHSYGDKNVCKDSNLNRSSSSSHRSFYYKADNVRKGLLSSSSSSSRYDRDRSLDEDREVSRLVRKRSDHDFESFDRRKGFDRYRDIGDSRGYGAGGDRSLIQRSESFCGSRRDFPKGFRSERDRSRREGSVSSWRRFGGGIKDFDDNGRGSRVGLEDRGVRSPKGLKDVKSPTWSRDSESEQSKMRSPPGGLRDTKSKSKSPTWSKDSESEQSKSEQSKSVEVKKTEELQVESRSSSEMEEGELEPEPIPETEPETAPKVPPENEDQASIPRDADDKEVQIEYQLNDADTAMHEKAEEPNKEEIKPIEDINSGENDVEKEADRLSDVQNGPAEKMHDTENEIETVVHDDNKEEESLKVDTECKDETKEGADLEKPLFCEEEHKSDKGVDLETRVDSDKPELNEIVSTENEVNKIDREMMVETVTSNAKDKGKSVSVTPSDVVHSSEDGLWIDRGLRDLATCSDDAMEGPSTRGFELFSRSPVRKVEKTDQSSLNKQKDGNLSMEELDLSLSLPNVLLPIGAHETLSVPRSPSQAKSMQSLSNTFRTNSEGFTASMSFSGSQSFYHNPSCSLTQNSLDYEQSVGSRPLFQGIDQVSQGGWQGQSQNDLKQKEIPLCQGTLMNGNGHFCQTQASWGILEGQAVKGQHSRVLEGSSKMASGLEKQLSFHKQLSGQSRRHDDVRSPSQSVGSHDIGSSYSFDKKREVRDRSTGNLYRTTSQKEQEQFQMGGIEFVETIIARIVSEPVHVMAKKFHEMTGLSAACLKESIREIMLNSDKRGQILAFQKILQNRSDITLEVLQMFHRVHLEILVALKTGLTNFLQIDNNISSSDLAEIFLNLRCRNLPCRSQLPVDECDCKVCVQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLQESYIRNGHSASGAQGVTEMQFHCIACGHPSEMFGFVKEVFLNFAQGWSVEDLCKELEYVKRIFSASKDMRGRQLHEIADQMLLRLANKSKLKEVYSHIMSFLSDGDSSKLAMTQNFSGREQIKENNGVAGPSQETAWMKSVYSDKPTLLERPANILPSYDRNDKRTPAQELQMTVQKDYCFDELESIVKIKQAEAKMFQSRSDDARREAEGLKRIALAKNEKIEEEYASRISKLQLTEAEELRKQKFEELQALERAHLEYFNMKMRMEADIKDLLLKMEATKRSLAM 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 208 250 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 488 502 - -
Glsi04g1970 1197 Pfam PHD - plant homeodomain finger protein 847 970 IPR032881 -
Glsi04g1970 1197 Pfam Coiled-coil region of Oberon 1070 1185 IPR032535 -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 1 32 - -
Glsi04g1970 1197 Coils Coil 1174 1194 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 474 506 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 118 140 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 117 419 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 18 32 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 46 67 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 669 719 - -
Glsi04g1970 1197 Coils Coil 1146 1166 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 703 717 - -
Glsi04g1970 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 838 859 IPR004082 -
Glsi04g1970 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 957 976 IPR004082 -
Glsi04g1970 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 758 780 IPR004082 -
Glsi04g1970 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 884 904 IPR004082 -
Glsi04g1970 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 812 827 IPR004082 -
Glsi04g1970 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 797 812 IPR004082 -
Glsi04g1970 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1131 1153 IPR004082 -
Glsi04g1970 1197 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1092 1112 IPR004082 -
Glsi04g1970 1197 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1195 IPR004082 -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 1 16 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 275 419 - -
Glsi04g1970 1197 MobiDBLite consensus disorder prediction 148 192 - -
Glsi04g1970 1197 CDD PHD_OBE1_like 877 936 IPR047578 -
Glsi04g1970 1197 Coils Coil 1116 1136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1970 Glsi-ChrGlsi04 69619662 69624254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1970 847 995 PHD Gene Family AT5G57380 28.188 5.23e-13 71.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1970 04 69619662 69624254 Glsi04g1970 04 69619662 69624254 ECH