Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1958 ATGGCGGAACCTCGCCCTAAGCGCCCAAAAATCGCCAGGGGGGAAGATGATTATATGCCTGGAAGCATTATTGAGATTGAACTTCTTAAGTTTATGACCTTTGATTACTTAAAATGTAAACCTGGTCCTCGTCTGAATCTTGTCATTGGGCCCAATGGTTCTGGGAAGAGCTCTCTTGTATGTGCCATTGCACTTGGCCTCGGTGGTGAGCCTCAGCTGCTAGGGCGAGCAACTAGTATTGGATCATACGTGAAGCGGGGAGAAGAATCTGGTTACATTAAGATTACGTTGAGAGGGGATAGTAAAGAGGAGTGTATCACCATTATTCGGAAAATAAATACTAACAACAAGTCTGAATGGTTGTTCAATGGAAAAGTAGTGCCCAAAAAGGATGTGGCTGAAGTCATTCAAAGGTTTAACATCCAAGTTAATAATTTGACTCAATTCTTACCTCAAGACAGGGTCTGTGAATTTGCCAAATTAACTCCTGTACAACTTCTGGAAGAGACTGAAAAGGCTGTTGGTGATCCCCAACTTCCAATCCTTCACCATGCACTTGTTGAAAAAAGTCGTGCATTGAAGCAAATTGAGCTGACTGTGGAGAAAAATGAAGGAACTTTAAATCAGCTGAAGGAACTTAATGCTGAATTGGAGAAGGATGTTGAGCGTGTCCGTCAAAGGGATGAACTCCTTAAAAAGGCTGATTCCATGAAAAAGAAAGTGCCATGGCTCAGATATGATATGAAGAAGGCTGAATATTTGGAAGTTAAAGAACTGGAACATGAAGCAAAAAAGAAGATGGAGGAAGCTGCAAAGATGTTAAATGATCTTAGAGAACCTATTGAGAACCAAAAAAAGGACAAGGCGGCATCGGATACTAAATGTAAAAAAATTACCAACCATATAAATGACAACACCAAGAAGCGAATGGAACTTCTGGAGAAAGAAAATCATCTGGGTGTGGAATTACGTGGAAAACAAAACGAAATGGAAGATTTGAGGAGGCAGGAAGAAACTCGTCAACAAAGACTTTTAAAAGCTAAGGAGGAACTTGCTGCTGCTGAGCTTGAACTAAATAATCTACCTCATTATGAACCTCCTAAGGATGAGATTGAAAGACTGAAAGATGAAATTCTGGAGTTAGACAATTCTGCATCTCAAATGAGGCTAGAAAAGTCAGAAACAGACAAACGTTTAAATCAAAAGAGGTCATCATTGACACAGTGTATAGAGAGGCTGAGGGAGATGGATAGTAAAAATACTAAGTGTTTGCATGCATTACGAGATTCTGGGGCTGAGAAGATAATTGAAGCATATAAATGGGTGCAAGAACATCGCCATGAATTCAATAAGGATGTTTATGGTCCTGTATTACTGGAGGTTAATGTCTCAAAGCAGACTCATGCTGGCTTCCTAGAGGGTCATGTTCCTTATTACATCTGGAAGTCTTTCATAACTCAAGATTCTGCTGATCGGGACCTTTTGGTGAAAAACCTAAGCTCCTTTGATGTTCCAGTTTTAAATTATACCGGTGATCAAAGTCGTCAAAGAGAGCCTTTTCAAATTTCTGAACATATGCGTACTCTTGGTATCTACTCCCGGCTTGACCAAGTTTTTGATGCTCCCATTGCGGTCAAGGAGGTTTTGACTGGGCAGTTTGGTCTAGATCATTCATATATTGGAACCAAAGAAACTGATCAGAAGGCGGATATGGTCCAAAAATTGGGCATTTTTGACTTTTGGACTCCAGAACATCACTATCGTTGGTCTAAGTCTAGATATGGGAATCATGTCTCTGGTGTTGTTGATCAAGTACCACGCTCAAAACTTCTTTCATATAATTTGGATGTGAGAGAAATTGAGAGGCTGAGGTCTCACAGAATGGAACTTGAAGAGTCTATAGCAACCTTGGAGGTAACTTCTAAAAGGTTTCAAGATGAGGAAAGACGCTTAAAGAATGATGCGGCTAATCTTCGCAGACAGCGGGAGGAAATAAACAATACGGTGCTTAAAGAGAAGGAAAAACGCCGTGACATCATGCGCCATATTGAACAAAGGAAAAGGAAATTGGAATCTATGGAAAAGGAGGATGACGTAGATATGGGTATGGCAAAGCTCATTGATCAAGCAACAAATTGTAATATTCAGAGATTCCGCAATGCAATCAAAATTAAGAACCTACTTGTTGAGGCTGTTGGTTATAGAAGGAGTTTTGCCGAAAAACATATGGCTGTCCTTGAATTTGATGCTAAGATTAGAGAATTGGAGGCCAGTCTGAAGCAGCATGAGAAGTTCGGTTTGCAAGCATCAATGCACTTTGAAAACTGTAGGAAGGATACTGAGGATTGCCGACAGCAGCTTTCAGAATTATTGAGGCGTGCCGAATCCATTGCTCCAATCACTCCGGAGCTTGAGAAGGCATTTCTTGAGATGCCCACTACTATGGAGGAATTAGAGGCTGCTATCCAAGACACCACTTCTCAAGCCAATTCTATACTTTTTGTCAATCATAATGTATTGGAACAATATGAGAACCGTCAACATCAGATAGAATCTCTTGCCACAAAACTTGAAGAAGATAAGAAGGAAGTAAGGAGGTGTCTAGCTGAAGTAGATACCCTAAAGGGGACATGGCTTCCAACATTGAGAAACCTAGTGGCCCAGATAAATGAGACTTTTAGTCGTAATTTCCAAGAGATGGCTGTTGCAGGAGAGGTTTCACTAGATGAGCATGATATGGACTTTGATCAGTTTGGGATACTTATAAAAGTAAAATTCAGACCAACAGGACAGCTTCAAGTTCTGAGTGCCCACCATCAGTCTGGAGGGGAGCGATCAGTTTCAACTATTCTTTATCTTGTTTCTCTTCAAGATCTTACAAACTGCCCATTTAGAGTGGTTGATGAGATAAATCAAGGCATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTCAGAGCTAGCAGCCAGCCAAATACACCACAATGTTTCTTGCTTACACCAAAGTTGCTGCCTGATCTGGAATACAGTGAAGTGTGCAGTATATTAAATGTAATGAATGGGCCTTGGATTGAGCAGCCTTCAAAAGTCTGGAGTAGTGGTGATCGCTGGGGAGCAATCAGTGGGTTGATGGTAGGGACCCAGCGCTGA 3156 0.4103 MAEPRPKRPKIARGEDDYMPGSIIEIELLKFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATSIGSYVKRGEESGYIKITLRGDSKEECITIIRKINTNNKSEWLFNGKVVPKKDVAEVIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHHALVEKSRALKQIELTVEKNEGTLNQLKELNAELEKDVERVRQRDELLKKADSMKKKVPWLRYDMKKAEYLEVKELEHEAKKKMEEAAKMLNDLREPIENQKKDKAASDTKCKKITNHINDNTKKRMELLEKENHLGVELRGKQNEMEDLRRQEETRQQRLLKAKEELAAAELELNNLPHYEPPKDEIERLKDEILELDNSASQMRLEKSETDKRLNQKRSSLTQCIERLREMDSKNTKCLHALRDSGAEKIIEAYKWVQEHRHEFNKDVYGPVLLEVNVSKQTHAGFLEGHVPYYIWKSFITQDSADRDLLVKNLSSFDVPVLNYTGDQSRQREPFQISEHMRTLGIYSRLDQVFDAPIAVKEVLTGQFGLDHSYIGTKETDQKADMVQKLGIFDFWTPEHHYRWSKSRYGNHVSGVVDQVPRSKLLSYNLDVREIERLRSHRMELEESIATLEVTSKRFQDEERRLKNDAANLRRQREEINNTVLKEKEKRRDIMRHIEQRKRKLESMEKEDDVDMGMAKLIDQATNCNIQRFRNAIKIKNLLVEAVGYRRSFAEKHMAVLEFDAKIRELEASLKQHEKFGLQASMHFENCRKDTEDCRQQLSELLRRAESIAPITPELEKAFLEMPTTMEELEAAIQDTTSQANSILFVNHNVLEQYENRQHQIESLATKLEEDKKEVRRCLAEVDTLKGTWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDEHDMDFDQFGILIKVKFRPTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRASSQPNTPQCFLLTPKLLPDLEYSEVCSILNVMNGPWIEQPSKVWSSGDRWGAISGLMVGTQR 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1958 1051 Gene3D - 845 1009 IPR027417 -
Glsi04g1958 1051 Coils Coil 371 391 - -
Glsi04g1958 1051 Coils Coil 249 276 - -
Glsi04g1958 1051 Pfam RecF/RecN/SMC N terminal domain 23 990 IPR003395 -
Glsi04g1958 1051 Coils Coil 620 696 - -
Glsi04g1958 1051 Coils Coil 193 234 - -
Glsi04g1958 1051 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1044 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Glsi04g1958 1051 Coils Coil 840 870 - -
Glsi04g1958 1051 Coils Coil 323 357 - -
Glsi04g1958 1051 Gene3D - 22 230 IPR027417 -
Glsi04g1958 1051 FunFam Structural maintenance of chromosomes 5 847 1018 - -
Glsi04g1958 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 666 1001 IPR027417 -
Glsi04g1958 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 277 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1958 Glsi-ChrGlsi04 69350810 69384159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1958 1 1043 Structural Maintenance of Chromosomes family AT5G15920 65.484 0.0 1402