Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi04g1950 | ATGGGTGGAGAAGGGAAGACAACTATTGCCAAAATAGTTTATAACAGGGTGTCTTGGCAATTTGATGCTCGTTGTTTCCTTGCCGATGTAACCAGAGTTTCCAAGCTTTCTGGTGTAGTTGCTCTACAAGAACAACTCCTTCGTCAAATTCAGATGCAGAAAAATGTGAAGATAAGGGACGTTGACGAGGGAACCTCACTAATACGCAACCATCTAAGTGGCCTCAAGACTCTCATAGTTGTTGATGATGAAATGGAACTGGTTGAAGCTGTAGCCTTAAATCCAGACGTTTTGGAAAAAGTATCATCTTGGGATGAGTCTTTATCAAAAATGAGAAAGCTCAGACTCTTCATATTCCGCCAGTATCCTTTATCTTACTTGTCATCTACGTTTGAGCCACGTACACTTGTTGAATTGGTCATGTCTAATAGTAGCATCATAAAATTATGGGAAGGCATAAAGACCTTGAAGGATGTACTGGATTATTGCAAGTTCATTCATCTAATGGAATTCTTCGGAAGCTCAAATTCTTGA | 534 | 0.397 | MGGEGKTTIAKIVYNRVSWQFDARCFLADVTRVSKLSGVVALQEQLLRQIQMQKNVKIRDVDEGTSLIRNHLSGLKTLIVVDDEMELVEAVALNPDVLEKVSSWDESLSKMRKLRLFIFRQYPLSYLSSTFEPRTLVELVMSNSSIIKLWEGIKTLKDVLDYCKFIHLMEFFGSSNS | 177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi04g1950 | 177 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 1 | 84 | IPR044974 | GO:0006952 | |
| Glsi04g1950 | 177 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 87 | IPR027417 | - | |
| Glsi04g1950 | 177 | Gene3D | - | 1 | 111 | IPR027417 | - | |
| Glsi04g1950 | 177 | Pfam | NB-ARC domain | 1 | 83 | IPR002182 | GO:0043531 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi04g1950 | Glsi-ChrGlsi04 | 69253862 | 69256256 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi04g1950 | 1 | 83 | WRKY Transcription Factor Family | AT5G45050 | 38.095 | 8.79e-11 | 58.2 |