Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1941 ATGGCATGCATAAAAGGGGTGAATCGATCGGCGTCCGTAGCCCTGGCTCCGGACGCACCGTACATGGCGGCCGGAACCATGGCGGGGGCCGTTGATCTGTCCTTCAGCTCGTCCGCTAATCTCGAAATATTCAAGCTTGATTTCCAGTCTGACGATCGGGAACTGCCCTTGGTCGGTGAGTGCCCGAGCTCCGAGCGGTTCAATCGTCTGTCCTGGGGGAAGTGTAATTCTGCTTCTGAAGGTTTCGCCCTCGGGCTTGTTGCTGGTGGGCTGGTCGATGGGAACATTGACCTCTGGAATCCTTTCACTCTGATCCGTTCAGAGACAAATGAAAATGCTCTTGTTGGACATCTTGTAAGGCATAAAGGGCCTGTTCGTGGTCTTGAGTTTAATGCTATTACACCAAACCTTCTTGCATCTGGGGCTGAGGATGGTGAAATTTGCATATGGGATTTGGCCAATCCTTCAGAGCCTTCTCATTTTCCACCGCTCAGGGGTAGTGGTTCTGCTTCCCAGGGGGAAATTTCATTCTTATCTTGGAATAGCAAAGTCCAGCACATATTAGCATCGACGTCATATAATGGGACCACTGTGGTCTGGGACCTAAAGAAGCAAAAGCCAGTGATAAGCTTTACAGACTCAGTTAGAAGGCGGTGCTCAGTTTTGCAGTGGAATCCTGATGTTGCCACTCAGCTTGTTGTTGCGTCAGATGAAGATGGTTCTCCTTCTCTGAGGCTTTGGGATATGAGGAATATAATGACACCTGTAAAGGAGTTTGTGGGACACAGTAGAGGTGTGATTGCAATGTCATGGTGTCCCAATGATAGCTCTTATTTGATTAGCTGTGCCAAAGATAGTCGAACTATATGCTGGGACACAATTTCTGGAGAGATTGTAAGTGAATTGCCTGCTGGGACCAACTGGAACTTTGATGTGCACTGGTATCCTAAGATACCTGGAGTAATATCAACATCTTCTTTTGATGGAAAAATTGGCATCTACAACGTTGAGGGTTGCAGTCGATATGGTGTTGGGGAAAATGATTTTGGCGCAGTATCTCTGAGAGCTCCAAAATGGTATAAACGTCCTGCTGGGGTGTCTTTTGGTTTTGGTGGCAAGCTTGTATCATTTCATCCCAAGTCATCTACCACAGGTGCTGTGGCTGGGGCTGGGGCTTCAGAGGTTTATGTGCATAATATGGTCACTGAACATAGTCTAGTGAGTCGTTCCTCTGAATTTGAAGCAGCAACACAAAATGGGGAGAGGTCTTTATTGAGGATTTTATGTGATAAAAAATCTCAGGAATCAGAGTCTGAAGAGGAAAGGGAAACATGGAACTTCTTGAAGGTTATGTTTGAAGATGATGGGACAGCACGAACAAAACTACTAACACACCTTGGTTTCAGTGTACCTATTGAAGAAAAGGACACAATTGTAGATGATCTTACCCAAGAAGTCAATGCTCTTGGACTTGAGGACACAGCTGTTGATAAAATAGGACATGGGGCTACTAATGACTCTACTGTTTTCCCTTCTGATAATGGGGAGGATTTCTTTAACAATCTTCCTAGTCCCAAGGCCGATTCACCTTTATCTACTGCTGGTGGTAACTTTGTTGCAGATAATGCCAATGGTTTAGAGAAAATCCAGGAAGAGTTGGAAACGGAGGAGAGCAATGATCCTACCTTTGATGATAGTATTCAGCGTGCTTTAGTTATTGGGGACTACAAGGGGGCAGTTGCGCTATGCATATCTGCAAATAAGTGGAGTGATGCTTTAGTTATTGCTCATGTAGGTAGTGCTTCATTGTGGGAAAGTACACGGGACCAATACCTTAAGATAGGCAGATCACCATACTTGAAGATTGTCTCAGCAATGGTGAGCAACGATCTCTTGAACCTCGTGAACACTAGACCTCTAAAATTTTGGAAAGAGACTCTTGCTCTTCTTTGTAGTTTTGCACAGAGAGATGAATGGACAATGCTTTGTGACACACTTGCTTCAAAACTCATGTTATCTGGCAATACATTAGCCGCAACTCTTTGTTATATATGTGCTGGAAATATTGATAAAACAGTCGAAATTTGGTCAAAGAATCTGCAGACTGAGCATGAAGGAAAATCTTATGTTGACCTTCTTCAGGATTTGATGGAAAAGACTATTGTTCTTGCCTTGGCAACTGGGCAGAAGCAATTTAGTGCATCTCTTTGCAAGCTTGTTGAGAAATATGCCGAAATTTTAGCAAGTCAAGGGCTGTTGACTACAGCAATGGAGTATTTAAAACTTTTGGGTTCTGATGAATTGTCACCTGAACTTTTAATCTTAAAAGATCGGATTACTCTTTCTACAGAACCTGAGAAAGACAACACGACTACTGCATTTGAAAATACTCAATCACAGAGTGGATCCTATTATGGCACCGATAATTCCAATTATAGTGGAAGTTATTACCAGGAGTCAGTATCCACACAAGTGCAGCATGGTGTTTCTGGAATTCCATATGACCAAAACTATCAACAGCCATTTGATCCTTCATATGGAAGAGGATATGCTGCTCCTGCTGCTGCTGCTTCTTATCAGCAACCTCAACAACCTAATATGTTTGTACCATCACCGGCACCTCAGGTTCCCCAGGTTTCCCAGCCAAACTTCTCTACTGCTCCTGCTGCACAGCCTCCTTTAAGACCTTTTGTGCCTCACACTCCTCCTGGGCTAAGAAATGTTGAGCAATATCAGCAGCCAACATTAGGTTCTCAGTTGTATCCTACAGCCGCCAATCCACCTTACCAACCTACACCCCCTCCCACCTCTCAAGTGGGTTTGGTTCATAGCCAGAAGATGCCACAGGTTGTGGCACCAACTCCACATCCAAGGGGATTCACACCAGTCTCCAGTTCTGGTGTTGCCCAAAGGCCTGGCATGGGATCAATGCAACCTCCTAGTCCTCCTCAGCCAGCACCTGTACAACCATCTCCAGCACCAGCAACTCCACCACCTACTGTGCAGACAGCCGATACTTCAAATGTGCCTGTTCACCAAAGGTCCATTGTCACAACATTGACAAGGCTTTTCAACGAGACATCAGAAGCACTGGGAGGTTCACGTGCAAATCCAGCGAAAAAGCGGGAGATAGAAGACAACTCTAGGAAACTCGGAGGATTATTTGCGAAATTGAACAGTGGGGACATCTCTAAAAATGCTGCTGATAAGCTCCTTCAGCTCTGTCAGGCCTTGGACAATGGAGATTTCGGTACTGCACTACAAATTCAGGTACTTCTTACTACAACCGAATGGGATGAATGCCAGTCCTGGTTAGGTTCACTGAAGCGAATGATCAAGACAAGGCAGAATCTTCTTGCAGTACTGACCCTTTCATCGATGCACACAAGATTGCCTTCTCTATATTGCAGGTGCAGGGTTTTGGTTCTTTGCTCTAATACAATTTCTTGCAGTGTCTGCTGCTTTCGCATCGACTGTCATTAG 3483 0.4496 MACIKGVNRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDRELPLVGECPSSERFNRLSWGKCNSASEGFALGLVAGGLVDGNIDLWNPFTLIRSETNENALVGHLVRHKGPVRGLEFNAITPNLLASGAEDGEICIWDLANPSEPSHFPPLRGSGSASQGEISFLSWNSKVQHILASTSYNGTTVVWDLKKQKPVISFTDSVRRRCSVLQWNPDVATQLVVASDEDGSPSLRLWDMRNIMTPVKEFVGHSRGVIAMSWCPNDSSYLISCAKDSRTICWDTISGEIVSELPAGTNWNFDVHWYPKIPGVISTSSFDGKIGIYNVEGCSRYGVGENDFGAVSLRAPKWYKRPAGVSFGFGGKLVSFHPKSSTTGAVAGAGASEVYVHNMVTEHSLVSRSSEFEAATQNGERSLLRILCDKKSQESESEEERETWNFLKVMFEDDGTARTKLLTHLGFSVPIEEKDTIVDDLTQEVNALGLEDTAVDKIGHGATNDSTVFPSDNGEDFFNNLPSPKADSPLSTAGGNFVADNANGLEKIQEELETEESNDPTFDDSIQRALVIGDYKGAVALCISANKWSDALVIAHVGSASLWESTRDQYLKIGRSPYLKIVSAMVSNDLLNLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLMLSGNTLAATLCYICAGNIDKTVEIWSKNLQTEHEGKSYVDLLQDLMEKTIVLALATGQKQFSASLCKLVEKYAEILASQGLLTTAMEYLKLLGSDELSPELLILKDRITLSTEPEKDNTTTAFENTQSQSGSYYGTDNSNYSGSYYQESVSTQVQHGVSGIPYDQNYQQPFDPSYGRGYAAPAAAASYQQPQQPNMFVPSPAPQVPQVSQPNFSTAPAAQPPLRPFVPHTPPGLRNVEQYQQPTLGSQLYPTAANPPYQPTPPPTSQVGLVHSQKMPQVVAPTPHPRGFTPVSSSGVAQRPGMGSMQPPSPPQPAPVQPSPAPATPPPTVQTADTSNVPVHQRSIVTTLTRLFNETSEALGGSRANPAKKREIEDNSRKLGGLFAKLNSGDISKNAADKLLQLCQALDNGDFGTALQIQVLLTTTEWDECQSWLGSLKRMIKTRQNLLAVLTLSSMHTRLPSLYCRCRVLVLCSNTISCSVCCFRIDCH 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1941 1160 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
Glsi04g1941 1160 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 301 IPR001680 GO:0005515
Glsi04g1941 1160 FunFam Protein transport protein SEC31 homolog B 1 337 - -
Glsi04g1941 1160 Gene3D - 1 337 IPR015943 GO:0005515
Glsi04g1941 1160 MobiDBLite consensus disorder prediction 918 1008 - -
Glsi04g1941 1160 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Glsi04g1941 1160 FunFam Protein transport protein SEC31 homolog B 353 783 - -
Glsi04g1941 1160 PANTHER SEC31-RELATED PROTEIN 3 1116 IPR040251 GO:0006888
Glsi04g1941 1160 MobiDBLite consensus disorder prediction 976 999 - -
Glsi04g1941 1160 MobiDBLite consensus disorder prediction 786 807 - -
Glsi04g1941 1160 SUPERFAMILY WD40 repeat-like 12 337 IPR036322 GO:0005515
Glsi04g1941 1160 FunFam Protein transport protein SEC31 homolog B 1005 1119 - -
Glsi04g1941 1160 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 160 IPR001680 GO:0005515
Glsi04g1941 1160 Gene3D Functional domain of the splicing factor Prp18 1006 1120 - -
Glsi04g1941 1160 Gene3D - 352 783 - -
Glsi04g1941 1160 Pfam Sec23-binding domain of Sec16 567 762 IPR024298 -
Glsi04g1941 1160 SMART WD40_4 111 151 IPR001680 GO:0005515
Glsi04g1941 1160 SMART WD40_4 161 201 IPR001680 GO:0005515
Glsi04g1941 1160 SMART WD40_4 204 248 IPR001680 GO:0005515
Glsi04g1941 1160 SMART WD40_4 252 292 IPR001680 GO:0005515
Glsi04g1941 1160 SMART WD40_4 295 335 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1941 Glsi-ChrGlsi04 69105648 69122212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1941 118 345 Miscellaneous Gene Families AT5G08390 23.043 5.35e-11 65.1