LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g1940	ATGGGGTACCTCTCTTGCAGAGCCGAATCTGCGGTCTCCACCTCCAATTCTCTTCCCCCTTCTTCCAAAGCGTCTGCTCACAAACCTGAAAGACCCATCAAGATCCAACAGTTCGACTACAGTGACCTTGAAGCAGCCACCAATGGCTTCTCCGACCGAAAGCTCTTAGGCAAAGGAAGCCATGGGCATGTGTATAAAGCCGTTCTTCGTGGCCGTGCCGTTGCGGTTAAGAGGCCATCTAGAGCTCAGGTTCAATCTCAGGGTCTTGTTCTCCGACCCAGCTTTCATTCTTCTTCTTCCTCTGCAGCCGAAATCACCAACGAGGTCGACAACGAGATCGACATCTTATCCAAAATTCAGAGCCCAGGATTGGTCAATTTGGTGGGTTTTTCAAACGATTCAAAAGACAGGCTTCTGGTGGTTGAGTTCATGAGCAACGGCACCCTTTATGATGTTCTTCATTCCTCTACTAGGCCACTCCATTGGGGTCGGAGAATTCGATTGGCTTTGCAAACTGCCAAGGCAATTGATACCCTTCATTCCTCAACCCCGCCTGTGATTCACCGAGACATCAAATCTGCTAATGTTCTAATCGACAGGAACTACAATGCTCGGTTAGGTGATTTTGGGTTAGCCATAAGGGGCCAAATGAATGATTATAGACTCAGGTCCACCCCACCTGCAGGCACTATGGGGTACCTTGATCCTTGTTATGTGACCCCAGATAATTTGAGTACAAAAACTGATGTATTTAGCTTTGGGATTTTGTTGTTAGAGATTATTAGTGGAAGGAAGGCCATTGATATTACATATTCTCCCCCATCTATTGTGGATTGGTCTATTCCTCTTATAAAGAAAGGGAAGCTACTTGCTGTTTATGATCCCAGAATATCACCTCCTAAGGATCAGGTAGTGATGAAGCAATTAGCAGTTATTGCAGCAAAATGTGTAAGATCTTGCAGGGAAAGAAGGCCTTCAATGAAGGACATAGTTGGTTGGCTTAGTGGATTGTGTAAGTTGGTGCCTCTTCATTCATGGAATGGTTTTAACAATCCTTGCATGATGGTTGAGGCTGTGGGACGCCCAGTTGAGGCAAGAAATGCCCAAGTCAGTTCAAAAAGAGAAGGTTTAGAAGGAGGAAACTTTAGTGTCTTGGATGGTAGATTGTCTAGATCTACAGGAAAATATTCCCGGAGAGTGTATTCTGATTTGGGGTTCAGCAGCAACTTGATGGATCTCATGGCCACCACTGAGGAGCCAGAATTTCTGAAAGATTCTGCTAACCCAGTTTCTAGCACAAGGTTTGGTAGTGGAAGATATTTTACAAGAGGCAGAAATCTTTATAAGGCTTGCGGTACTGATAAAGATGCATTTGGTTTGAGCAAAGGGCCAATTGTTGGAGGAAGCTCAAACGGATATTCAAAACAGGATGATATTTCTGGCTCCAATTTGAATTCTCATGTAGCAGAAGTTATCTAG	1479	0.4462	MGYLSCRAESAVSTSNSLPPSSKASAHKPERPIKIQQFDYSDLEAATNGFSDRKLLGKGSHGHVYKAVLRGRAVAVKRPSRAQVQSQGLVLRPSFHSSSSSAAEITNEVDNEIDILSKIQSPGLVNLVGFSNDSKDRLLVVEFMSNGTLYDVLHSSTRPLHWGRRIRLALQTAKAIDTLHSSTPPVIHRDIKSANVLIDRNYNARLGDFGLAIRGQMNDYRLRSTPPAGTMGYLDPCYVTPDNLSTKTDVFSFGILLLEIISGRKAIDITYSPPSIVDWSIPLIKKGKLLAVYDPRISPPKDQVVMKQLAVIAAKCVRSCRERRPSMKDIVGWLSGLCKLVPLHSWNGFNNPCMMVEAVGRPVEARNAQVSSKREGLEGGNFSVLDGRLSRSTGKYSRRVYSDLGFSSNLMDLMATTEEPEFLKDSANPVSSTRFGSGRYFTRGRNLYKACGTDKDAFGLSKGPIVGGSSNGYSKQDDISGSNLNSHVAEVI	492

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g1940	492	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	186	198	IPR008271	GO:0004672\|GO:0006468
	Glsi04g1940	492	ProSiteProfiles	Protein kinase domain profile.	50	347	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g1940	492	FunFam	Serine/threonine-protein kinase-like protein At1g28390	20	143	-	-
	Glsi04g1940	492	FunFam	Serine/threonine-protein kinase-like protein	144	347	-	-
	Glsi04g1940	492	Pfam	Protein tyrosine and serine/threonine kinase	54	331	IPR001245	GO:0004672\|GO:0006468
	Glsi04g1940	492	SMART	serkin_6	50	334	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g1940	492	MobiDBLite	consensus disorder prediction	9	23	-	-
	Glsi04g1940	492	Gene3D	Phosphorylase Kinase; domain 1	22	143	-	-
	Glsi04g1940	492	PANTHER	OS01G0253100 PROTEIN	25	337	-	-
	Glsi04g1940	492	ProSitePatterns	Protein kinases ATP-binding region signature.	56	77	IPR017441	GO:0005524
	Glsi04g1940	492	MobiDBLite	consensus disorder prediction	9	31	-	-
	Glsi04g1940	492	SUPERFAMILY	Protein kinase-like (PK-like)	27	334	IPR011009	-
	Glsi04g1940	492	Gene3D	Transferase(Phosphotransferase) domain 1	144	342	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g1940	Glsi-ChrGlsi04	69090371	69091849	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g1940	38	382	Receptor kinase-like Gene Family	AT3G59420	39.943	6.26e-74	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Glsi04g1940		PK_Tyr_Ser-Thr	3.6e-37	CL0016