Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1929 ATGTTCGTTGGGGATGCAATGCAAGACTTAACTCTAGTTATCCTTCTAATATGTGCTATGGTTTCAGTAAGCGTTAAAATGTCAACTGAAGATTGGCCAAAAGGGATGTATGATGGTGTGGGAATTATTCTCTTTATATTCTTAGTAGTCTTTGTCACTTCATTCAGTGACTATAAACAGTCTTTGCTATTCAAGGATTTGGATGAAGAAAAGAAAAATTCTATATTTCAGAATACTAGCTCAGAGGTAGTAAAAGGGGAAGATGGGAAGAAAAAGGTCATAGGTACTCCAACGGAGACGGCATTAGTGGAATTTGGCTTGCTTTTGGGAGGTGATTTTAAGGCTTATAATGAGAAGTATAAAATAGTAATGGTTGAACCGTTCAATTCAATCGGAAAGAAGATGACGGTTCTTGTAACTCTTCCCGGTGGCACCAAACGATCTAGAGCATTGTGCAAAGGAGCATCAGAAATAGTTGTGAAAATGTGTGACAAATGGGTTAGTGCAGAAGGCGAAGTCGTCCGTTTGTACGATGAACAAAAAAAGAACATTGAAGAAGTTATTAATGGTTTTGGTCCTGAAACTCTCAAAACTCTCTGCGTTGCCTTCAAGGATATCGAAGGACCTTCCAATGGTGATAGCATTTCCGAGGATAATTATACATTGATAGCTATTATTGGGATCAAGGATCCACTGAGGCCTGGCGTAAAAGAAGCTGTCAAGACTTGTCTGGCAGCTGGGATTACCATGAGGATGGTAACTGGTGATAACATAGTTACTGCTAAGGCAATAGCTAGAGAATGTGGCGTCTTGACAGATGGATTGGCTATAGGGGAGAAAGAATTCCTCAACATGACCCGAAAGGAGATGGAGGAGATAATACCAAAAATACAGGTACTGGCTCGCTCCTTGCCTCTGGATGAGCGCACTTTGGTGACCCATTTGATGAATGACTTCAAGGAAGTTGTTGCAGTAACTGGTGATGGGACCAATGGTACTCCAGCATTGCATGAGGAGGATGAGGCTGATGTAGATCTAGCAATGGGCATTGCAGGAACACTGAAGTCTTCCTATATTACCTTAATCTTGTCTTGTCTTCTTATATTACCTTGTCTCTTGTCTTTGAATTGCATATTGATAGTTATTTCATTGCGTATTAATGGTGTTTCCTTTCAAGTCACCATCAACTTTCTTGATTTAGTGCCACTGAGCTGGGAATTGTGGTTAGCCAGCGTCCTGGTTGGTGCGTCCAGTTTACTCGTAGCTCTTGTTCTGAAGTGCATTCCAGTTCCAGTGACTTGTAATTACAACTCAACGCACCATGATGGTTCCGAGCGAATCCCCTGTGGCCCAGAGCTGGCATGA 1365 0.4168 MFVGDAMQDLTLVILLICAMVSVSVKMSTEDWPKGMYDGVGIILFIFLVVFVTSFSDYKQSLLFKDLDEEKKNSIFQNTSSEVVKGEDGKKKVIGTPTETALVEFGLLLGGDFKAYNEKYKIVMVEPFNSIGKKMTVLVTLPGGTKRSRALCKGASEIVVKMCDKWVSAEGEVVRLYDEQKKNIEEVINGFGPETLKTLCVAFKDIEGPSNGDSISEDNYTLIAIIGIKDPLRPGVKEAVKTCLAAGITMRMVTGDNIVTAKAIARECGVLTDGLAIGEKEFLNMTRKEMEEIIPKIQVLARSLPLDERTLVTHLMNDFKEVVAVTGDGTNGTPALHEEDEADVDLAMGIAGTLKSSYITLILSCLLILPCLLSLNCILIVISLRINGVSFQVTINFLDLVPLSWELWLASVLVGASSLLVALVLKCIPVPVTCNYNSTHHDGSERIPCGPELA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1929 454 PRINTS P-type cation-transporting ATPase superfamily signature 224 235 - -
Glsi04g1929 454 PRINTS P-type cation-transporting ATPase superfamily signature 326 345 - -
Glsi04g1929 454 PRINTS P-type cation-transporting ATPase superfamily signature 246 256 - -
Glsi04g1929 454 Pfam Cation transport ATPase (P-type) 80 165 - -
Glsi04g1929 454 Gene3D - 232 353 IPR023214 -
Glsi04g1929 454 SUPERFAMILY HAD-like 217 349 IPR036412 -
Glsi04g1929 454 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 64 236 IPR023299 GO:0000166
Glsi04g1929 454 Gene3D - 78 231 IPR023299 GO:0000166
Glsi04g1929 454 PANTHER CATION TRANSPORTING ATPASE 2 74 - -
Glsi04g1929 454 SUPERFAMILY Calcium ATPase, transmembrane domain M 5 73 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1929 Glsi-ChrGlsi04 68928398 68938885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1929 1 94 Primary Pumps ATPases AT2G41560 54.255 6.48e-24 103