Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1921 ATGAGTCACTGTAAGGTTTTATTATTTGGGACGTTTACTGAAGATGAAACCAGACCACTGGTAAAGCCGTCATTTGAGAAAAATGGAAAGCCTGTGGAGAATAAAAATTGCAATGGAATCATCACAGTTTCTGAGAATGTAAACAAAAACGGAAGCGTTCATAATTTTTCCTCAAAATTGTCCCATCAAGGCTCAAGAAAGGCACCTAATGGGCATGCTGAACGTGTTAAGGACCTACTGCCTAGAGGCCTGATTAATTCCGGGAATTTGTGCTTTCTAAACGCTACAATGCAGGCTCTGTTGTCCTGTTCTCCTTTTGTTCACCTTCTGCAGGAATTAAGAAGTCGCAACATTCCTAAGGTTGGCTATCCTACATTGACTGCATTTTCTGAGTTTATAATTCAATTTGATACGCCAAGGTGTTCAAATTTGAAGAAGAAAGATATGGCTAATCTTGAGACTGGAAGTCCATTTTGCCCTCTCATGTTTCAAGGTGTTCTAAAAAAATTTACTCCAGATGTGTCAAATAACATATCAGGAAGATCAAGGCAGGAAGATGCTCAGGAATTTTTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTGAAGCTTGATGGGGACAAATCTTCTCTAGTTTCTTCTGAGGAAGATGATGAATGGGAAACAGTGGGACCAAAGAACAAATCTGCTGTAACAAGGATTCAAAGCTTTGCTCCTTCCCAATTGAGCGATATTTTTGGAGGACAATTGAGAAGTTTGGTGAGGGCTAAAGAAACTGTTGAAGGATACAAAACGTCAATGAATGGAAAGGCTAGTGTTGTAAGTGTAAGAAAATCTGTACAAATACAGACACTTCCAAAGATACTGATATTGCACCTCATGCGTTTTGGTTATGGAAGCCAGGGAAGCACTAAGTTCCATAAGCCTGTATACTTTCCTCTTGAATTGATGTTGAGTCGTGACTTGCTTGTTTCACCATCTACCGAGGGTCGAAAATATGAACTTGTTGCTACAATTACGCACCATGGAAGGGAGTCTTCAAAGGGGCACTACACTACCGATGCCCGACACCCAAATGGTCAATGGCTACGGTTTGATGACGCATCTGTCTCTGCCATTGGAACAAATAAGGTGCTCCATGGTCAGGCATACATCCTCTTCTACAAACAAATATGA 1179 0.4046 MSHCKVLLFGTFTEDETRPLVKPSFEKNGKPVENKNCNGIITVSENVNKNGSVHNFSSKLSHQGSRKAPNGHAERVKDLLPRGLINSGNLCFLNATMQALLSCSPFVHLLQELRSRNIPKVGYPTLTAFSEFIIQFDTPRCSNLKKKDMANLETGSPFCPLMFQGVLKKFTPDVSNNISGRSRQEDAQEFLSFVMDQMHDELLKLDGDKSSLVSSEEDDEWETVGPKNKSAVTRIQSFAPSQLSDIFGGQLRSLVRAKETVEGYKTSMNGKASVVSVRKSVQIQTLPKILILHLMRFGYGSQGSTKFHKPVYFPLELMLSRDLLVSPSTEGRKYELVATITHHGRESSKGHYTTDARHPNGQWLRFDDASVSAIGTNKVLHGQAYILFYKQI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1921 392 Pfam Ubiquitin carboxyl-terminal hydrolase 83 389 IPR001394 GO:0004843|GO:0016579
Glsi04g1921 392 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 83 98 IPR018200 GO:0004843|GO:0006511
Glsi04g1921 392 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 82 392 IPR028889 -
Glsi04g1921 392 Gene3D Cysteine proteinases 258 391 - -
Glsi04g1921 392 SUPERFAMILY Cysteine proteinases 80 391 IPR038765 -
Glsi04g1921 392 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 271 392 - -
Glsi04g1921 392 Gene3D Cysteine proteinases 80 257 - -
Glsi04g1921 392 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 334 352 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1921 Glsi-ChrGlsi04 68794933 68798179 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1921 79 392 Miscellaneous Gene Families AT2G24640 26.648 2.12e-18 85.1