Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1906 ATGGGACGCCAACGCGGATACCATCCATCGTTAAGGGGCCGATTGACTAATGGCAAAACTTGGGCCGACTTTGCAGCTATTTATTTGGATTTACCTATGCCTCCTGCATACTTGAATCTCTCCGATTCTGAAAGAAGTCAAATAACCACTGGAATAAACTATGCATCGGGAGCACGTGGAATCTTAAACACAACTAGAGCTACACTTTATAATCTTGGAGCAAGAAAATTTTTGGTTTCTGGCATTTCACCTTGTCAGCCATATCAATATGGACGATCCTGTGAATCAAGGTACTATGCAGACAAACTTCCTCAAAGGCTACTGGAGTTGCAATCCAAACTCTCTGGTTCATTATTTACAATATTCGATGGAGCCAACCTATCCAAAGAAATTATGATAAATCATGAAAAATATGGTGGGAGGCTGTTTTATTTGCCGGGGGGAGAAGCCATTCCTCCACTTGATCTTTTTTCAATTTATAACATTGACAAAATGGCCGTGCGAGAGATACCCACCTGGAATGCTACGATTAGAGGCGGCTATGCAGGGTCTGGGAATATGGAGAATGCAGTGGAATTGTTTATGTTAACGAAGCATAAGCATGTAGCTAAACCAAACAAAGGAAAAGAAAACAAGAGAAGCAAAACAAAAGAAAAAACCACCATGGATTTGGATTCCAAAGAGAACCTGCTGCCAAAAACTTCCTCTCATCATCATCAAGAGCAGGAAGATGATGGTCCTGGCCTCTCGGCAATGCTGCTATGCACTAGCCAGGTATTTTCTGCCGTTTTAAATGCTGCAGTTGAGCTCAACTTGTTTGAGATCATAGCTAAGGCAAATGGAAAATTCATGTCAGCCTCTGAGATTGCTTTTCAGCTTCCAACTCCATCACAGCACCAAGAATTGCCTTCCAGGATTGATAGGATGCTGCGCTTGCTTGCTAGTCACAATATTCTTTCTTGTTCCTATGGTACCAATGAAGATGGTGGGACTGAAAGACTCTATGGCCTTTCACCCACTGGGAAATACTTTGTCAATGATGAAAATGCTGGCTTATACATAGTATCAACATTTCTGTGTCATCGAGCACTTGTGGATGCTTGGCTTAACTTTAAGGATGCAATTATAGACAAAGACAATGACTTATTCAAGAAAGTTCACGGAATGCCCATGTACCAATACACAGAAATAGATCCAACATGGAATCACATTTTCAACAAAGCCATGGCCAATCTCTGCAATGTAGTGATGAAAAGGATACTTGAAATTTATAAAGGATTTGAGGGATTATCAACGCTGGTTGATGTGGGAGGTGGCACTGGGCAAAATCTAAAATTGATAGTCTCCAAGTACCCTTCAATAAAGGGAATTAATTTTGATTTGCCTCAAGTGATTCAAAATGCACCACCCCATCCAGGGATTGAGCATGTTGGAGGGGATATGTTTGCCGGTGTTCCAAAAGGTGATGCCATAATATTAAAGGCTGTATGCCATAATTGGTCAGATGAGAATTGCATAAAAATATTGAGTAATTGCTTTGAAGCATTGGCAGAAAATGGGAAGATGTTACTTCCGGAGAATAATAATTTTGAGTCTACCATTGCTTTTGAATATGTAACTTCCTTTGCCAGTGGTGTACCTGGTTACTATCATTGTTTAATCCACCGAGACTTCAAGAGTTTACTTCAGCTTGTATGA 1698 0.4058 MGRQRGYHPSLRGRLTNGKTWADFAAIYLDLPMPPAYLNLSDSERSQITTGINYASGARGILNTTRATLYNLGARKFLVSGISPCQPYQYGRSCESRYYADKLPQRLLELQSKLSGSLFTIFDGANLSKEIMINHEKYGGRLFYLPGGEAIPPLDLFSIYNIDKMAVREIPTWNATIRGGYAGSGNMENAVELFMLTKHKHVAKPNKGKENKRSKTKEKTTMDLDSKENLLPKTSSHHHQEQEDDGPGLSAMLLCTSQVFSAVLNAAVELNLFEIIAKANGKFMSASEIAFQLPTPSQHQELPSRIDRMLRLLASHNILSCSYGTNEDGGTERLYGLSPTGKYFVNDENAGLYIVSTFLCHRALVDAWLNFKDAIIDKDNDLFKKVHGMPMYQYTEIDPTWNHIFNKAMANLCNVVMKRILEIYKGFEGLSTLVDVGGGTGQNLKLIVSKYPSIKGINFDLPQVIQNAPPHPGIEHVGGDMFAGVPKGDAIILKAVCHNWSDENCIKILSNCFEALAENGKMLLPENNNFESTIAFEYVTSFASGVPGYYHCLIHRDFKSLLQLV 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1906 565 SUPERFAMILY "Winged helix" DNA-binding domain 244 348 IPR036390 -
Glsi04g1906 565 Pfam Dimerisation domain 263 314 IPR012967 GO:0046983
Glsi04g1906 565 Gene3D Vaccinia Virus protein VP39 402 526 IPR029063 -
Glsi04g1906 565 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 356 529 IPR029063 -
Glsi04g1906 565 MobiDBLite consensus disorder prediction 202 246 - -
Glsi04g1906 565 Gene3D - 384 420 IPR036388 -
Glsi04g1906 565 Gene3D SGNH hydrolase 2 68 IPR036514 -
Glsi04g1906 565 PANTHER O-METHYLTRANSFERASE 251 526 IPR016461 GO:0008168
Glsi04g1906 565 MobiDBLite consensus disorder prediction 209 245 - -
Glsi04g1906 565 Gene3D - 258 380 IPR036388 -
Glsi04g1906 565 CDD AdoMet_MTases 432 524 - -
Glsi04g1906 565 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 252 565 IPR016461 GO:0008168
Glsi04g1906 565 FunFam Caffeic acid 3-O-methyltransferase 230 344 - -
Glsi04g1906 565 Pfam O-methyltransferase domain 368 526 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1906 Glsi-ChrGlsi04 68580766 68595159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1906 244 526 Monolignol Biosynthesis Gene Families AT5G54160 51.930 6.83e-97 298