Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1899 ATGGCTTTGGATTCCAAAGACAACCTGCTGCAAAAAACTTCCTCCCATCATCATCAAGAGCAGGAAGATGATGGTCCTGGCCTCTCTGCAATGCTGCTATGCACTAGCCAGATCTATTCTGCCGTTTTAAATGCTGCAGTTGAGCTCAACTTGTTTGAGATCATAGCTAAGGCAAATGGAAAATTCATGTCAGCCTCTGAGATTGCTTCTCAGCTTCCAACTCCATCACAGCACCAGGAATTGCCTTCCAGGATTGCTAGGATGCTGCGCCTTCTTGCTAGTTACAATATTCTTACTTGTTCCTATGGTACCAATGAAGATGGTGGAACTGAAAGACTCTATGGCCTTTCACCCACTGGGAAATACTTTGTCAATGAAGAAAATGCTGGCTTATATATAGTACCAACATTTCTGTGTCATCGAGCACTTGTGGATGCTTGGCGTAACTTTAAGGATGCAATTATAGACAAAGACAATGACCTATTCAAGAAAGTTCACGGAATGCCCATGTACCAATACACAGAAATTGATCCAACATGGAATCACATTTTCAACAAAGCAATGGCCAATCTCTGCAATTTAGAGATGAAAAGGATACTTGAAATTTATAAAGGATTTGAGGGATTATCAACACTGGTTGACGTGGGAGGTGGCACTGGGCAAAATCTAAAATTGGTAGTCTTCAAGTACCCTTCAATAAAGGGTATTAATTTTGATTTGCCTCAAGTGATTCAAAATGCACCACCCCATCCAGTTGGTCTATTTTTACGACTTGATGAGCAAATTATCAAACTTTATGAAGGGATTGTGCATGTTGGAGGAGATATGTTTGCCGGTGTTCCAAAAGGTGATGCAATAATATTAAAGGCTGTATGCCATAATTGGTCAGATGAGAATTGCATAAAAATATTGAGCAATTGCCGCGAAGCATTGGCAGAAAATGGGAAGGTGATCGTTGTGGAACTCATAATGCCAGAAGTGATTGTGCCAACAGAGGCAGCCAAGTTAGTTTCCACCCTTGACAACCTCATGTTTCTTCATGATGGCCAAGAGAGAACTGAGAAAGAGTACGAGACTTTGTGCAAACACTCTGGATTTTCTGGTTTCAAAGTTGCTTGCCGTGCCTTCTCTGTTTTAGGAGTGATGGAATTTTACAAATAA 1161 0.41 MALDSKDNLLQKTSSHHHQEQEDDGPGLSAMLLCTSQIYSAVLNAAVELNLFEIIAKANGKFMSASEIASQLPTPSQHQELPSRIARMLRLLASYNILTCSYGTNEDGGTERLYGLSPTGKYFVNEENAGLYIVPTFLCHRALVDAWRNFKDAIIDKDNDLFKKVHGMPMYQYTEIDPTWNHIFNKAMANLCNLEMKRILEIYKGFEGLSTLVDVGGGTGQNLKLVVFKYPSIKGINFDLPQVIQNAPPHPVGLFLRLDEQIIKLYEGIVHVGGDMFAGVPKGDAIILKAVCHNWSDENCIKILSNCREALAENGKVIVVELIMPEVIVPTEAAKLVSTLDNLMFLHDGQERTEKEYETLCKHSGFSGFKVACRAFSVLGVMEFYK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1899 386 SUPERFAMILY "Winged helix" DNA-binding domain 23 127 IPR036390 -
Glsi04g1899 386 Gene3D Vaccinia Virus protein VP39 181 375 IPR029063 -
Glsi04g1899 386 PIRSF O-mtase 8 386 IPR016461 GO:0008168
Glsi04g1899 386 FunFam Caffeic acid O-methyltransferase 125 386 - -
Glsi04g1899 386 Gene3D - 163 199 IPR036388 -
Glsi04g1899 386 FunFam Caffeic acid 3-O-methyltransferase 9 123 - -
Glsi04g1899 386 MobiDBLite consensus disorder prediction 10 24 - -
Glsi04g1899 386 Pfam O-methyltransferase domain 147 367 IPR001077 GO:0008171
Glsi04g1899 386 Gene3D - 37 159 IPR036388 -
Glsi04g1899 386 PANTHER O-METHYLTRANSFERASE 31 376 IPR016461 GO:0008168
Glsi04g1899 386 Pfam Dimerisation domain 42 93 IPR012967 GO:0046983
Glsi04g1899 386 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 384 IPR029063 -
Glsi04g1899 386 CDD AdoMet_MTases 211 320 - -
Glsi04g1899 386 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 386 IPR016461 GO:0008168
Glsi04g1899 386 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1899 Glsi-ChrGlsi04 68415319 68417997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1899 23 378 Monolignol Biosynthesis Gene Families AT5G54160 48.611 4.24e-112 330