Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi04g1896 | ATGGCTTTGGATTCCAAAGACAACCTGCTGCCAAAAACTTCCTCTCATCATCATCAAGAAAAGGAAAATGATGATCCTTGCCTCACTGCGATGCTGCTATGCACTAGCCAGGTCTATTCTGCAGTTCTAAATGCCGCAGTTGAGCTCAACTTGTTTGAGATCATAGCTAAGGCAAATGGAAAATTGATGTCAGCTTCTGAGATTGCTTCTCAGCTTCCAACTCCTTCACAGCACCAAGAATTGCCTTTCAGGATCGATAGGATGCTGCGTCTGCTTGCTAGTCACAATCTTCTTACTTGTTCTTATGGTACAAATGAAGATGGGAGGACTGAAAGACTCTATGGCCTTTCACCCGCTGGGAAATACTTTGTCAATGATGAAAATGCTGGCTTATATATATTGTCAACATTTCTGTGTCATCGAGTGCTTATGGATGCTTGGCTCAATTTTAAGGATGCAATTATAGACAAAGACAATGACCTATTCAAGAAAGTTCATGGAATGCCCATGTACCAATACACAGAGATAGATCCAACATGGAATCACATTTTCAACAAAGCGATGGCCAATGTTTGCAATATAGAGATGAAAATGATACTCGAAATTTACAAAGGATTTGAGGGTTTATCAACACTGGTTGATGTGGGAGGTGGCACTGGGCAGAATCTAAAATTGGTAGTCTCTAAGTACCCTTCCATAAAGGGCACTAATTTTGATTTGCCCCAAGTGATTCAAAATGCACCACCCCATGAAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAGGTCTTCCAAAAGGGGATGCCATAATATTAAAGGCTGTATGTCATAATTGGTCAGATGAAAATTGCATAAAAATATTGAGTAATTGCTACGAAGCATTGACAGAAAATGGGAAGGTGATCGTTGTGGAATTCATAATGCCTGAAGCAATTGCCCCAACAGAGGAAGCCAAGTTCGTTTCCAGCATTGACAACCTCATGTTTCTTCATGATGGCAAAGAGAGAACTGAGAAAGAGTATGAGACTTTGTGCAAACGCTCTGGCTTTTCTGGTTTCAAAGTTGCCTGCCGTGCCTTCTCTGTATTAGGAGTGATGGAATTTTACAAATAA | 1113 | 0.4088 | MALDSKDNLLPKTSSHHHQEKENDDPCLTAMLLCTSQVYSAVLNAAVELNLFEIIAKANGKLMSASEIASQLPTPSQHQELPFRIDRMLRLLASHNLLTCSYGTNEDGRTERLYGLSPAGKYFVNDENAGLYILSTFLCHRVLMDAWLNFKDAIIDKDNDLFKKVHGMPMYQYTEIDPTWNHIFNKAMANVCNIEMKMILEIYKGFEGLSTLVDVGGGTGQNLKLVVSKYPSIKGTNFDLPQVIQNAPPHEGIEHVGGDMFAGLPKGDAIILKAVCHNWSDENCIKILSNCYEALTENGKVIVVEFIMPEAIAPTEEAKFVSSIDNLMFLHDGKERTEKEYETLCKRSGFSGFKVACRAFSVLGVMEFYK | 370 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi04g1896 | 370 | Gene3D | Vaccinia Virus protein VP39 | 124 | 370 | IPR029063 | - | |
| Glsi04g1896 | 370 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 31 | 370 | IPR016461 | GO:0008168 | |
| Glsi04g1896 | 370 | FunFam | Caffeic acid 3-O-methyltransferase | 10 | 123 | - | - | |
| Glsi04g1896 | 370 | Pfam | Dimerisation domain | 42 | 93 | IPR012967 | GO:0046983 | |
| Glsi04g1896 | 370 | Pfam | O-methyltransferase domain | 147 | 351 | IPR001077 | GO:0008171 | |
| Glsi04g1896 | 370 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Glsi04g1896 | 370 | Gene3D | - | 11 | 123 | IPR036388 | - | |
| Glsi04g1896 | 370 | PANTHER | O-METHYLTRANSFERASE | 31 | 360 | IPR016461 | GO:0008168 | |
| Glsi04g1896 | 370 | FunFam | Caffeic acid O-methyltransferase | 125 | 370 | - | - | |
| Glsi04g1896 | 370 | CDD | AdoMet_MTases | 211 | 308 | - | - | |
| Glsi04g1896 | 370 | SUPERFAMILY | "Winged helix" DNA-binding domain | 22 | 127 | IPR036390 | - | |
| Glsi04g1896 | 370 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 133 | 368 | IPR029063 | - | |
| Glsi04g1896 | 370 | PIRSF | O-mtase | 9 | 370 | IPR016461 | GO:0008168 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi04g1896 | Glsi-ChrGlsi04 | 68379258 | 68381535 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi04g1896 | 23 | 362 | Monolignol Biosynthesis Gene Families | AT5G54160 | 51.744 | 1.81e-118 | 346 |