Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1859 ATGAGTTGGCAGAATATGCTAGTACTTATGCCTTATGATGAATGTGATTCTGTTTGGCTGGTGGTTGCTTGTACGGGCATGGCTTCTAGTAATCCATTCTTTGATGATATACGGATCAAATCTGATGTTGATCCTCCTCAAAATGAGGAGTTGATGGATGTCAGTGAGATTGTTAATGATTCTACTCAAACTTCTTTAAAATCTAATGCAACTGTTACAAGCAGTGTTCGCGAGCTTTTAGAGTGCCCTGTGTGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCCAATGGCCACACTTTATGCTCGGGTTGCAAACCCAGGGTCCACAACCGGTGCCCTACTTGTAGACATGAGCTTGGCAATATCAGATGCCTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCTTGTAAATATCAACCTTTTGGGTGCATGGGCATATATCCATATTACTGCAAGCTAAAACATGAATCTCAATGTGCATATAGACCTTATAACTGTCCATATGCCGGTTCAGAATGCACTGTCATTGGTGATATACCTTATTTGGTGGCCCATCTGAAAGATGATCACAAAGTGGACATGCACAATGGCAGCACTTTTAACCATCGCTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGCTTACGGTCTTCAGTTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTGGGAATGGCTCCGGTCTACATAGCCTTCTTGCGTTTTATGGGTGATGATAATGAGGCAAAGAACTATAGCTACAGTCTTGAGGTTGGTGGAAATGGTAGGAAGATGATTTGGCAAGGTGTGCCTAGAAGCATTAGAGACAGCCACCGCAAGGTTCGTGACAGTTTTGATGGACTCATCATTCAAAGGAACATGGCCCTCTTCTTTTCAGGGGGTGACAGGAAGGAATTGAAGCTACGGGTTACTGGGAGAATTTGGAAAGAACAATGA 993 0.431 MSWQNMLVLMPYDECDSVWLVVACTGMASSNPFFDDIRIKSDVDPPQNEELMDVSEIVNDSTQTSLKSNATVTSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQPFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECTVIGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1859 330 CDD RING-HC_SIAHs 80 118 - -
Glsi04g1859 330 FunFam E3 ubiquitin-protein ligase SINAT5-like 40 133 - -
Glsi04g1859 330 FunFam E3 ubiquitin-protein ligase SINAT5-like 191 323 - -
Glsi04g1859 330 Pfam Seven in absentia protein family 124 323 IPR018121 GO:0005737|GO:0006511|GO:0007275
Glsi04g1859 330 CDD Sina 196 324 - -
Glsi04g1859 330 SUPERFAMILY RING/U-box 81 123 - -
Glsi04g1859 330 ProSiteProfiles Zinc finger SIAH-type profile. 135 195 IPR013010 GO:0008270
Glsi04g1859 330 ProSiteProfiles Zinc finger RING-type profile. 82 118 IPR001841 -
Glsi04g1859 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 134 IPR013083 -
Glsi04g1859 330 FunFam E3 ubiquitin-protein ligase SINAT3 134 190 - -
Glsi04g1859 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 190 IPR013083 -
Glsi04g1859 330 SUPERFAMILY TRAF domain-like 135 327 - -
Glsi04g1859 330 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 191 323 IPR008974 GO:0005515
Glsi04g1859 330 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 64 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1859 Glsi-ChrGlsi04 67716145 67718832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1859 73 330 C3H Transcription Factor Family AT2G41980 78.682 7.91e-159 444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g1859 04 67716145 67718832 Glsi04g1859 04 67716145 67718832 ECH