Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1858 ATGTCAACACCACTGTTGATGGAGTCCCTAGTTCTTCAACTCCATGAGATCTCAGCCGTGAAATTTGGCAACTTCAAGCTCAAATCTGGCATTTCCTCACCTATCTACTTAGACCTCCGTCTCATTATATCCTACCCTTCCCTCCTCCGCCAAATCTCCCAAAAGCTGATTTCCTCTGTCCCTTCCTCTTCATTTGATCTTGTATGTGGGGTCCCTTACACTGCTCTACCCATTGCCACTTGTGTCTCTGTCACTCAGAACATTCCCATGGTCATGCGCCGGAAGGAAATCAAAGACTATGGCACTGCCAAAGCCATTGAAGGTGATTTCAAGGCTGGCCAAAGTTGTTTGATTGTTGAGGACCTCGTCACCAGTGGCACATCAGTAATAGAAACCGCTGCACCCCTACGTGCTGCAGGGTTGAAGGTCAGTGATGCTGTTGTTTTGATTGACAGAGAACAAGGTGGGAGAGAGAATTTGAAGGAGAATGGGATTAGGCTGCATGCAATTGTAAAATTGACTGAAATGGTGAAAATTTTGAGGGACAAAGGAAAACTCGATAAGGAGATGGTAGGAGTTGTTTTGAAATTCTTAGAGAAGAATCAGAAGGTTGCTGCTTCGGTAAAGATGGAAAAGCCTACCAGGGTCAAGGATTTATCATTTGTGGAGAGAGCAAAGTTGTCCAAGAATCCAACTGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCAGAATTGCTTGACATTGCTGAGAAGGTTGGGCCTGAGATATGCTTGCTGAAAACTCATGTGGATATTTTACCGGATTTTACTCCTGATTTTGGTTATAAGCTTCGCTCGATTGCAGAAAAACATAACTTCTTAATCTTTGAGGATCGTAAATTTGCTGACATTGGTAACACAGTGACTATGCAGTATGAAGGAGGGATCTTTCATATACTGGATTGGGCTGATATAGTAAATGCTCACATTATTTCTGGTCCTGGAATTGTGGATGGATTGAAACTAAAGGGTTTGCCTCGTGGTAGAGGTCTGTTGTTGCTTGCTGAAATGAGTTCAGCTGGTACCCTTGCCAAGGGAGATTATACAGCTGCAGCGGTAAAAATTGCCGAGGATCATTCTGATTTTGTTATTGGCTTCATCTCAGTCAATCCAGCATCATGGTCAGGGGCACCCCTAAATCCTTCTTTCATTCATGCAACTCCTGGAGTTCAAATGGCCACTGGTGGTGATGCATTAGGGCAGCAATATAGCACTCCATATTCTGTGATTTATGATAGGGGTAGTGACATAATAATTGTAGGCCGTGGCATCATCAAGGCAGAAAATCCGGCTGAGGCAGCTCATGAATACCGACTTCAAGGATGGAGTGCTTATTTGGCCAAGTGCTCATGA 1434 0.4407 MSTPLLMESLVLQLHEISAVKFGNFKLKSGISSPIYLDLRLIISYPSLLRQISQKLISSVPSSSFDLVCGVPYTALPIATCVSVTQNIPMVMRRKEIKDYGTAKAIEGDFKAGQSCLIVEDLVTSGTSVIETAAPLRAAGLKVSDAVVLIDREQGGRENLKENGIRLHAIVKLTEMVKILRDKGKLDKEMVGVVLKFLEKNQKVAASVKMEKPTRVKDLSFVERAKLSKNPTGKRLFEIMAEKESNLCLAADVGTAAELLDIAEKVGPEICLLKTHVDILPDFTPDFGYKLRSIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILDWADIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGTLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWSGAPLNPSFIHATPGVQMATGGDALGQQYSTPYSVIYDRGSDIIIVGRGIIKAENPAEAAHEYRLQGWSAYLAKCS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1858 477 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 230 IPR023031 GO:0004588|GO:0006221
Glsi04g1858 477 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 302 315 IPR018089 GO:0004590|GO:0006207
Glsi04g1858 477 NCBIfam orotidine-5'-phosphate decarboxylase 247 465 IPR014732 GO:0004590|GO:0044205
Glsi04g1858 477 SUPERFAMILY PRTase-like 7 198 IPR029057 -
Glsi04g1858 477 Gene3D - 5 212 IPR029057 -
Glsi04g1858 477 SMART OMPdecase_2 246 464 IPR001754 GO:0004590|GO:0006207
Glsi04g1858 477 SUPERFAMILY Ribulose-phoshate binding barrel 218 473 IPR011060 -
Glsi04g1858 477 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 245 464 IPR001754 GO:0004590|GO:0006207
Glsi04g1858 477 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 6 476 - -
Glsi04g1858 477 Gene3D Aldolase class I 216 477 IPR013785 -
Glsi04g1858 477 CDD PRTases_typeI 65 172 IPR000836 -
Glsi04g1858 477 FunFam Uridine monophosphate synthetase 216 477 - -
Glsi04g1858 477 CDD OMP_decarboxylase_like 247 464 - -
Glsi04g1858 477 FunFam Uridine monophosphate synthetase 4 207 - -
Glsi04g1858 477 NCBIfam orotate phosphoribosyltransferase 14 175 IPR004467 GO:0004588
Glsi04g1858 477 Pfam Phosphoribosyl transferase domain 51 159 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1858 Glsi-ChrGlsi04 67710123 67713631 Dispersed/Wgd