Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1853 ATGGCTGCCTGCCCTTTATTTTTCTTATCATTTTCTGTCATTTTCCTTCTTCTTCCCCACACAACAACAACAGCCACTGAAACTTCTTGCAACAGAACATCTTGTGGAACTGCATGGAATGTACCTTCTATTCATTCCCCTTTCTATTTGAAGTACAATCAAAGCCAGACTTGCGGGTACCAAGGCTTTGAGCTTTTCTGCAACAACAAAGACATGAAACAAACTCTGATCAGTCTCCCGAAAGCCGGAACCTTCGTCGTCAATAACATCTCCTACGCCGATCAGAAGCTTTGGATCAACGACCCAGATGATTGCCTACCCAAACGCTTCCTGCAACATCGAAACCTTGACCTTACTGTTTCGCCATTTCAGTCTCTTCCAATTACTGTGAACGTCACCTTCTTCAACTGCTCCACTAAGGAGTTTCATGCCTTTAATTTTCTGGAGCCCATACCTTGTTTAAGTGGTGGTGGTGATGGTGAATATTCGGTAGTAGCTATGGCGCCGGAACTGAAATATATCTTTCCGGCGTCGTGGAATGACGTTTTGGGGTGCCAGGTTATTTCCTCAGCTCTGGTTCCATTGGAATTGGATGATGAATTTGGGATATTCATGACGAAGCAGCTTTACTCTGATATCGAGTTGCAATGGATTATACCTGTCAGTCCAAATTGTGACTCAAGTAAACCTAAAAAAGGCCTAGGCTTAAGCCTGGGAATAGCAGCAGGAGCAGGAGTGATATTTATGATGGTGCACTTATGTATGTTGTGCTGTGCTAAGGTTATAGTGAACCGTGAGGTGCCAAGAGAGGCAGCAAGAATGGAACCAAATAACCAGCAGCAACCCTCTGTAGCAGCAGCCGCCGCAACAGCAATGGAGGATGATGAAGTAGACACAGAGAGATATCCCAAAACGAAGATTGAAGATGATGAAGGCCTAGAGTTGTCTAGTTCTAGTGACAATGGCAACGTTTGCACCATATGTCTTTGTAAGTACCAACCCAAGGAGATATTGAGGACTATACCAGATTGTAAGCACTATTTCCATGCCCATTGCATAGATGGGTGGCTTAAGATTAATGCTTCATGCCCCTTGTGTAGAAAATTGCCAAAGAGTTCCACTTTCCTCGCCTCCTCTCTGTCTCTATCTTCATTTTCTTTAGAGTAA 1167 0.4396 MAACPLFFLSFSVIFLLLPHTTTTATETSCNRTSCGTAWNVPSIHSPFYLKYNQSQTCGYQGFELFCNNKDMKQTLISLPKAGTFVVNNISYADQKLWINDPDDCLPKRFLQHRNLDLTVSPFQSLPITVNVTFFNCSTKEFHAFNFLEPIPCLSGGGDGEYSVVAMAPELKYIFPASWNDVLGCQVISSALVPLELDDEFGIFMTKQLYSDIELQWIIPVSPNCDSSKPKKGLGLSLGIAAGAGVIFMMVHLCMLCCAKVIVNREVPREAARMEPNNQQQPSVAAAAATAMEDDEVDTERYPKTKIEDDEGLELSSSSDNGNVCTICLCKYQPKEILRTIPDCKHYFHAHCIDGWLKINASCPLCRKLPKSSTFLASSLSLSSFSLE 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1853 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 372 IPR013083 -
Glsi04g1853 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 370 IPR046948 -
Glsi04g1853 388 SUPERFAMILY RING/U-box 303 370 - -
Glsi04g1853 388 ProSiteProfiles Zinc finger RING-type profile. 325 367 IPR001841 -
Glsi04g1853 388 SMART ring_2 325 366 IPR001841 -
Glsi04g1853 388 Pfam Wall-associated receptor kinase galacturonan-binding 30 101 IPR025287 GO:0030247
Glsi04g1853 388 Pfam Ring finger domain 324 367 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1853 Glsi-ChrGlsi04 67621788 67626789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1853 30 370 C3H Transcription Factor Family AT2G46495 29.738 4.87e-38 138