Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1852 ATGGCTACCTTCCCATTCTACTTCTTAGCTTCTTCTCTCTTCTTCCTTCTCCTTCTTCCTCACTCAACAACAAGCACTGAAACTTGCACTAGGAGATTCTGTGGAAGCTCACCGTTTGCTCCTCCTATTCGCTTCCCTTTCAAGGTCAAAGGAGACAACCAAAGAGAAAGTTGTGGGTACCCGGGCTTCGACGTTTTCTGCAGCAAGAACAAGAGCCAGACGCTGCTCAGTTTCGAAGAAGGCGGCATTTACACCCTCAAGAGCATCTCCTACGCCGATCGCAAGCTTTGGATCAACGACCCCGACGATTGTCTCCCAAAACGCTTCCTCTATCAACGAATCATAGGCTTTTCAGGTTCTCCCTTCGAACTGAGCGACGATCTCAGGCTCGTGAACTTCACCTTCTTCAATTGCTCCAGCGAGGATTTCCATGTCTCCTACCCGATGGAGCCCATAGATTGCCTGAGCGACGGCAAGACTAACACTTCGGTGGTGGCTATGGCGTCGGAATCGGAAACGGATCCTCTCTCTCCGAAGCCGATTGTTAACTTGTCAGGGTGCCAGGTGATTTCCTCGGCTTGGGTTCCGTTTAACCAATTCCGATACGGGTTATACTTGACGGATCAGCTTTACGATGATATCCAGTTGCAATGGACAGCCCCTAGCTGCGGGTATCCAGATTGTGAAGGTTCATCAAATAAAAGCAAATATGGCCTAGGCTTAGGCTTGGGAATACCAGCCGGCATAATGTGGTTCATTATGGTTTTATATTTCGTTTACTCCGCTCTGACACTAAGGACGAGCCGGGAACGAGTGGAGACAGGAAGCATTGAATCAAACAATAACCACCACCACCAGCAACCCTCTATTGCAGCTCCAGCAGTGGTGATTGGTGAAGCAAACATAGAAAGATATCCAAAAACAAAGGTTGAAGATGATGGAAAGTTGCCAAACCCTAACGATACTGTGTGCTCCATATGCCTGTGCGAGTACCAACCCAAGGAGATATTGAGGACTATACCAGATTGCAATCACTATTTCCACGCCCATTGCTTAGAGGGGTGGCTTAAGATTAATGCTTCATGCCCTTTGTGTAGGAACCTGCCAAAGAGTTCCTCTTGCCTCACATCTTCTAATCTGCCCCAATCTTCATCTTCTCTATGA 1164 0.4794 MATFPFYFLASSLFFLLLLPHSTTSTETCTRRFCGSSPFAPPIRFPFKVKGDNQRESCGYPGFDVFCSKNKSQTLLSFEEGGIYTLKSISYADRKLWINDPDDCLPKRFLYQRIIGFSGSPFELSDDLRLVNFTFFNCSSEDFHVSYPMEPIDCLSDGKTNTSVVAMASESETDPLSPKPIVNLSGCQVISSAWVPFNQFRYGLYLTDQLYDDIQLQWTAPSCGYPDCEGSSNKSKYGLGLGLGIPAGIMWFIMVLYFVYSALTLRTSRERVETGSIESNNNHHHQQPSIAAPAVVIGEANIERYPKTKVEDDGKLPNPNDTVCSICLCEYQPKEILRTIPDCNHYFHAHCLEGWLKINASCPLCRNLPKSSSCLTSSNLPQSSSSL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1852 387 Pfam Wall-associated receptor kinase galacturonan-binding 29 100 IPR025287 GO:0030247
Glsi04g1852 387 ProSiteProfiles Zinc finger RING-type profile. 324 366 IPR001841 -
Glsi04g1852 387 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 369 IPR046948 -
Glsi04g1852 387 SMART ring_2 324 365 IPR001841 -
Glsi04g1852 387 Pfam Ring finger domain 323 366 IPR001841 -
Glsi04g1852 387 SUPERFAMILY RING/U-box 316 368 - -
Glsi04g1852 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 371 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1852 Glsi-ChrGlsi04 67598098 67600249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1852 44 369 C3H Transcription Factor Family AT2G25410 32.670 1.21e-42 151