Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1851 ATGGCGGTTGGTGAAGCAGACATAGAAAGATATCCAAAATCAAAGGTTGAAAATGATGGAAAGTTGCCAAACCCTAATAATGATACTGTGTGCTCCATATGTTTATCTGAGTACCAACCCAAGGAGATATTGAGGACTATACCAGATTGCAATCACTATTTCCACGCCCATTGCTTAGACGGGTGGCTTAAGATTAATGCTTCATGCACTTTGTGTAGGAACCTGCCAAAGATTTCTTCTCTTCTTTTCTTTCTCCTCCTTCTTCCTCTTCCAACAACAAGCACTGAATATTGCGCTTGGAGTTACTGTGGAAGCTCTTTTTCTCTCCCTATTCACTTCCCTTTCAAGCTCAAAGAAGACGGGCAAAGCGATAGTTGTGGGTACCCAGGCTTCGACGTTTTCTGCAGCAACAATAGCAAGAACCAGACTTTGCTCCGTCTCCCAAACGGCGGCGTTTTCGCCCTCAAGAGCATCTCCTATGCGGATCGCAATCTTTGGATCAACGACCCGGACAATTGCCTCCCAAAACGCTTCCTCCATCAGCGAATCATAGACTTCTCAGGTTCTCGCTTTGAACTGAGCGACGATCTCAGACTCGTGAACTTCACCTTCCTCAACTGCTCCAACGAGAATTTCCATGGATCCTTCCCGACGGAACCCATACCTTGCCTGAGCGACAGCAAAAGCGGCAGTTCGGTCGTGGCTGTGGCGACAAAATGGGAATCGGAACCTGAACCTGTCTTTGCGACGTCGCCGATGGTTAACTCGTCAGGGTGCCAGCAACCCTTTAGTGCAGCTCCACCAGTGGTAGTTGGTGAAGCAAACATAGAAAGATATCCAAAAACAAAGGTTGAAGATGATGGAAAGGTGCCAAACCCTGATGATACTGTGTGCTCCATATGTTTATGTGAGTACCAACCCAAGGAGATATTGAGGACTATACCGAATTGCAATCACTATTTCCACGCCCATTGCTTAGACGGATGGCTCAAGATTAATGCTTCATGCCCTATGTGTCGGAACCTGCCAAAGAGTTCCTCTAGCCTCACATCTTCTAATTTGTCCAAATCTTCTTCTTCATGA 1083 0.4645 MAVGEADIERYPKSKVENDGKLPNPNNDTVCSICLSEYQPKEILRTIPDCNHYFHAHCLDGWLKINASCTLCRNLPKISSLLFFLLLLPLPTTSTEYCAWSYCGSSFSLPIHFPFKLKEDGQSDSCGYPGFDVFCSNNSKNQTLLRLPNGGVFALKSISYADRNLWINDPDNCLPKRFLHQRIIDFSGSRFELSDDLRLVNFTFLNCSNENFHGSFPTEPIPCLSDSKSGSSVVAVATKWESEPEPVFATSPMVNSSGCQQPFSAAPPVVVGEANIERYPKTKVEDDGKVPNPDDTVCSICLCEYQPKEILRTIPNCNHYFHAHCLDGWLKINASCPMCRNLPKSSSSLTSSNLSKSSSS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1851 360 ProSiteProfiles Zinc finger RING-type profile. 31 73 IPR001841 -
Glsi04g1851 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 345 IPR013083 -
Glsi04g1851 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 77 IPR013083 -
Glsi04g1851 360 ProSiteProfiles Zinc finger RING-type profile. 298 340 IPR001841 -
Glsi04g1851 360 Pfam Wall-associated receptor kinase galacturonan-binding 101 169 IPR025287 GO:0030247
Glsi04g1851 360 SMART ring_2 298 339 IPR001841 -
Glsi04g1851 360 SMART ring_2 31 72 IPR001841 -
Glsi04g1851 360 Pfam Ring finger domain 30 73 IPR001841 -
Glsi04g1851 360 Pfam Ring finger domain 297 340 IPR001841 -
Glsi04g1851 360 SUPERFAMILY RING/U-box 27 75 - -
Glsi04g1851 360 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 76 IPR046948 -
Glsi04g1851 360 SUPERFAMILY RING/U-box 291 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1851 Glsi-ChrGlsi04 67528092 67532860 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1851 8 81 C3H Transcription Factor Family AT5G07040 50.000 9.81e-19 80.5